Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g005580.2.1 | Tomato | nucleus | 95.92 | 95.92 |
| PGSC0003DMT400056890 | Potato | nucleus | 74.93 | 75.15 |
| Os03t0659800-01 | Rice | plastid | 27.7 | 72.52 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 67.64 | 67.84 |
| KRH44865 | Soybean | nucleus | 64.43 | 65.19 |
| KRH13038 | Soybean | nucleus | 63.85 | 64.6 |
| CDY66795 | Canola | cytosol | 45.48 | 64.46 |
| CDY40055 | Canola | cytosol | 61.22 | 63.44 |
| AT1G16520.1 | Thale cress | cytosol | 59.48 | 62.77 |
| Bra026043.1-P | Field mustard | cytosol | 60.35 | 62.54 |
| AT1G56080.1 | Thale cress | nucleus | 55.39 | 61.29 |
| CDY54262 | Canola | nucleus | 53.06 | 59.67 |
| Bra040781.1-P | Field mustard | nucleus | 52.19 | 58.5 |
| CDY63493 | Canola | nucleus | 52.19 | 58.5 |
| Zm00001d033465_P001 | Maize | cytosol | 56.27 | 56.43 |
| EER91123 | Sorghum | cytosol | 56.56 | 56.07 |
| Zm00001d013624_P001 | Maize | cytosol | 55.69 | 55.69 |
| GSMUA_Achr9P26210_001 | Banana | cytosol | 55.1 | 55.1 |
| Zm00001d029987_P001 | Maize | cytosol | 15.45 | 54.64 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 53.64 | 54.6 |
| Os04t0616000-01 | Rice | nucleus | 49.27 | 54.17 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 53.64 | 53.96 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 53.64 | 53.8 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 52.19 | 53.43 |
| Zm00001d026302_P002 | Maize | nucleus | 50.44 | 52.27 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 49.85 | 51.66 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 49.85 | 51.66 |
| EES12856 | Sorghum | nucleus | 50.44 | 51.34 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 49.85 | 51.2 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 48.1 | 50.93 |
| Zm00001d002315_P003 | Maize | cytosol | 48.69 | 50.3 |
| Zm00001d033261_P001 | Maize | cytosol | 11.37 | 49.37 |
| Os01t0768300-00 | Rice | cytosol | 48.69 | 48.13 |
| OQU87614 | Sorghum | cytosol | 48.1 | 47.28 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 48.69 | 44.65 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 48.69 | 44.53 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 48.1 | 44.24 |
| Zm00001d043333_P001 | Maize | mitochondrion | 41.11 | 39.72 |
| Zm00001d043760_P001 | Maize | cytosol | 11.95 | 37.96 |
| PGSC0003DMT400081752 | Potato | nucleus | 34.4 | 35.76 |
| Zm00001d019442_P001 | Maize | cytosol | 14.29 | 30.43 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 31.78 | 29.38 |
| Zm00001d003628_P001 | Maize | plastid | 13.7 | 25.0 |
| Zm00001d038230_P001 | Maize | cytosol | 14.87 | 21.25 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400029232 | EnsemblPlantsGene:PGSC0003DMG400011241 | EntrezGene:102579228 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:WAT1-related | ncoils:Coil | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF134 | PGSC:PGSC0003DMG400011241 | RefSeq:XP_015166474.1 |
| SEG:seg | UniParc:UPI000294FC8D | UniProt:M1ASG2 | MapMan:13.7.2.4 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011241]
Coordinates
chr10:-:645274..650807
Molecular Weight (calculated)
38386.8 Da
IEP (calculated)
9.172
GRAVY (calculated)
-0.777
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLNSSSDSS RSTGPDFHLS DEILSVIPTD PYDQLDLARK ITSMAIASRV TKLESETGRL RQKLSDKDRV IVELQDKVSQ LEKACHENEL RLQFTCEDNM
101: KLTKERDSLA MTVKKMGRDL AKLETFKRQL VQSLSDDNSA QAETVDIGTY DQSTHKAYSV KEEVNSYAVH HSFSGSMDST VINDDASKRA LQRYSMSPYI
201: TPRLTPTGTP KIISTSVSPR RYSVAGSPQR MSGANSPTNS QYEGRGSMSS FFPSSQQSSA ANSPPKSRPL PGQTPRIDGK EFFRQARSRL SYEQFSAFLT
301: NIKELNAQKQ SREDTLKKSE EIFGTENNDL YLSFQGLLNR SAR
101: KLTKERDSLA MTVKKMGRDL AKLETFKRQL VQSLSDDNSA QAETVDIGTY DQSTHKAYSV KEEVNSYAVH HSFSGSMDST VINDDASKRA LQRYSMSPYI
201: TPRLTPTGTP KIISTSVSPR RYSVAGSPQR MSGANSPTNS QYEGRGSMSS FFPSSQQSSA ANSPPKSRPL PGQTPRIDGK EFFRQARSRL SYEQFSAFLT
301: NIKELNAQKQ SREDTLKKSE EIFGTENNDL YLSFQGLLNR SAR
001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
Arabidopsis Description
At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.