Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0659800-01 | Rice | plastid | 27.41 | 71.76 |
| KRH13038 | Soybean | nucleus | 58.6 | 59.29 |
| KRH44865 | Soybean | nucleus | 58.31 | 59.0 |
| Zm00001d033465_P001 | Maize | cytosol | 58.6 | 58.77 |
| CDY66795 | Canola | cytosol | 41.11 | 58.26 |
| Zm00001d013624_P001 | Maize | cytosol | 57.73 | 57.73 |
| EER91123 | Sorghum | cytosol | 58.02 | 57.51 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 56.27 | 56.6 |
| AT1G16520.1 | Thale cress | cytosol | 53.35 | 56.31 |
| Bra026043.1-P | Field mustard | cytosol | 54.23 | 56.19 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 55.69 | 55.85 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 55.69 | 55.85 |
| CDY54262 | Canola | nucleus | 49.56 | 55.74 |
| PGSC0003DMT400029232 | Potato | nucleus | 55.1 | 55.1 |
| CDY40055 | Canola | cytosol | 53.06 | 54.98 |
| AT1G56080.1 | Thale cress | nucleus | 49.56 | 54.84 |
| Bra040781.1-P | Field mustard | nucleus | 48.69 | 54.58 |
| CDY63493 | Canola | nucleus | 48.69 | 54.58 |
| Solyc10g005580.2.1 | Tomato | nucleus | 54.52 | 54.52 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 53.06 | 54.33 |
| Os01t0768300-00 | Rice | cytosol | 53.94 | 53.31 |
| OQU87614 | Sorghum | cytosol | 53.35 | 52.44 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 49.27 | 52.16 |
| PGSC0003DMT400056890 | Potato | nucleus | 51.9 | 52.05 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 49.56 | 50.45 |
| Solyc07g066520.2.1 | Tomato | nucleus | 51.02 | 48.48 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 50.44 | 46.38 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 50.44 | 46.26 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 50.44 | 46.13 |
| Zm00001d043760_P001 | Maize | cytosol | 13.7 | 43.52 |
| Zm00001d043333_P001 | Maize | mitochondrion | 44.61 | 43.1 |
| GSMUA_Achr11P... | Banana | cytosol | 39.36 | 40.54 |
| Zm00001d019442_P001 | Maize | cytosol | 17.2 | 36.65 |
| Zm00001d038230_P001 | Maize | cytosol | 18.08 | 25.83 |
| Zm00001d003628_P001 | Maize | plastid | 13.7 | 25.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P26210_001 | EnsemblPlants:GSMUA_Achr9T26210_001 | EnsemblPlantsGene:GSMUA_Achr9G26210_001 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:WAT1-related | ncoils:Coil | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF134 | SEG:seg | UniParc:UPI000296CC35 |
| UniProt:M0U3M8 | MapMan:13.7.2.4 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G26210_001]
Coordinates
chr9:+:30700975..30704411
Molecular Weight (calculated)
38213.2 Da
IEP (calculated)
9.985
GRAVY (calculated)
-0.648
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQGGGGGGS EFHLPDEILA VMPTDPYEQL DLARKITSLA IASRVSKLEL EAGRLRQSVA EKDRTIADLQ EKLAQFDRVF QQTDSRLRAA LEENVKLAKE
101: RDSLAQISKK LTRDLTKLEA FKKHLLQSLN EDNTPQQDPV DIRAFSFIMI FHYYGVEDEV SFSRSASSDS YPTSTSTDMG NMTLDVTRPY GQKISKTPPL
201: PPRLTPTATP KVTSTAGSPK RSSVALLPKY ASGASSPTKN HFEGLTLSPW FPSSKQSSAA NSPPRGRSIP GRMPRVDGKE FFRQARSRLS YEQFGAFLAN
301: IKELNAHRQS REETLRKADE IFGTENKDLF LSFQGLLNRN QQP
101: RDSLAQISKK LTRDLTKLEA FKKHLLQSLN EDNTPQQDPV DIRAFSFIMI FHYYGVEDEV SFSRSASSDS YPTSTSTDMG NMTLDVTRPY GQKISKTPPL
201: PPRLTPTATP KVTSTAGSPK RSSVALLPKY ASGASSPTKN HFEGLTLSPW FPSSKQSSAA NSPPRGRSIP GRMPRVDGKE FFRQARSRLS YEQFGAFLAN
301: IKELNAHRQS REETLRKADE IFGTENKDLF LSFQGLLNRN QQP
001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
Arabidopsis Description
At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.