Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63493 | Canola | nucleus | 95.08 | 94.77 |
| AT1G56080.1 | Thale cress | nucleus | 78.03 | 76.77 |
| Os03t0659800-01 | Rice | plastid | 25.57 | 59.54 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 62.62 | 55.85 |
| KRH13038 | Soybean | nucleus | 61.97 | 55.75 |
| KRH44865 | Soybean | nucleus | 61.64 | 55.46 |
| CDY40055 | Canola | cytosol | 58.36 | 53.78 |
| Zm00001d029987_P001 | Maize | cytosol | 17.05 | 53.61 |
| PGSC0003DMT400056890 | Potato | nucleus | 59.67 | 53.22 |
| PGSC0003DMT400029232 | Potato | nucleus | 59.67 | 53.06 |
| CDY66795 | Canola | cytosol | 41.64 | 52.48 |
| Solyc10g005580.2.1 | Tomato | nucleus | 58.36 | 51.9 |
| Solyc07g066520.2.1 | Tomato | nucleus | 60.33 | 50.97 |
| Os04t0616000-01 | Rice | nucleus | 51.48 | 50.32 |
| GSMUA_Achr9P26210_001 | Banana | cytosol | 55.74 | 49.56 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 52.46 | 48.34 |
| Zm00001d033261_P001 | Maize | cytosol | 12.46 | 48.1 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 52.13 | 48.04 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 52.13 | 47.6 |
| Zm00001d026302_P002 | Maize | nucleus | 51.48 | 47.43 |
| Zm00001d002315_P003 | Maize | cytosol | 51.48 | 47.29 |
| EER91123 | Sorghum | cytosol | 53.44 | 47.11 |
| EES12856 | Sorghum | nucleus | 51.48 | 46.59 |
| Zm00001d013624_P001 | Maize | cytosol | 52.13 | 46.36 |
| Zm00001d033465_P001 | Maize | cytosol | 51.48 | 45.91 |
| OQU87614 | Sorghum | cytosol | 51.8 | 45.27 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 47.54 | 44.75 |
| Os01t0768300-00 | Rice | cytosol | 50.16 | 44.09 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 48.85 | 43.7 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 48.85 | 43.57 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 47.54 | 43.03 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 47.21 | 42.99 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 49.18 | 40.11 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 48.2 | 39.41 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 48.2 | 39.2 |
| CDY65145 | Canola | nucleus | 40.66 | 37.13 |
| CDY22903 | Canola | nucleus | 40.33 | 36.72 |
| Zm00001d043333_P001 | Maize | mitochondrion | 39.67 | 34.08 |
| Zm00001d043760_P001 | Maize | cytosol | 11.8 | 33.33 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 32.79 | 26.95 |
| Zm00001d019442_P001 | Maize | cytosol | 14.1 | 26.71 |
| Zm00001d003628_P001 | Maize | plastid | 11.8 | 19.15 |
| Zm00001d038230_P001 | Maize | cytosol | 14.75 | 18.75 |
Protein Annotations
| EnsemblPlants:CDY54262 | EnsemblPlantsGene:GSBRNA2T00013734001 | GO:A0A078IW84 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:WAT1-related | ncoils:Coil | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF134 | ProteinID:CDY54262 | ProteinID:CDY54262.1 |
| SEG:seg | UniParc:UPI0004EDF3D9 | UniProt:A0A078IW84 | MapMan:13.7.2.4 | : | : |
Description
BnaCnng26600DBnaCnng26600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW84]
Coordinates
chrLK033297:+:14937..16784
Molecular Weight (calculated)
33898.4 Da
IEP (calculated)
9.463
GRAVY (calculated)
-0.792
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPDFSLSD EILAVIPTDP YEQLDLARKI TSMAIASRVS NLESQVSVLT QKLREKDKLI DDLEGRASSL ERLYHEAGSS LKNALDENMK LRQERDSLAI
101: TAKKLGRDYA KLEAFKRQLM QSLNDENPSQ IDSTDVRDKD ENSNGLSTHD SFSNNNQGLR QRASLTPPGL TPSGTPKMVS AGGSPRSYSA ASSPKLFSGA
201: ASPTASQYDH IRMWSSSSQQ SSVPNSPPRS HSTSARHARI DGKEFFRQAR SRLSYEQFSA FLANIKELNA RKQSREETLR KSEEIFGTEN NDLYISFKGL
301: LTSGR
101: TAKKLGRDYA KLEAFKRQLM QSLNDENPSQ IDSTDVRDKD ENSNGLSTHD SFSNNNQGLR QRASLTPPGL TPSGTPKMVS AGGSPRSYSA ASSPKLFSGA
201: ASPTASQYDH IRMWSSSSQQ SSVPNSPPRS HSTSARHARI DGKEFFRQAR SRLSYEQFSA FLANIKELNA RKQSREETLR KSEEIFGTEN NDLYISFKGL
301: LTSGR
001: MSQSGGDFNL SDEILAVIPT DPYDQLDLAR KITSMAIASR VSNLESQVSG LRQKLLEKDR LVHELEDRVS SFERLYHEAD SSLKNVVDEN MKLTQERDSL
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR
Arabidopsis Description
At1g56080 [Source:UniProtKB/TrEMBL;Acc:Q0IGM5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.