CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67751
CDX74700
CDX98303
CDY18962
CDY27400
CDY37020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	CDX74700	AT2G44950.1	21798944
AT4G15545.1	CDY18962	AT2G44950.1	21798944
AT4G15545.1	CDY27400	AT2G44950.1	21798944
AT4G15545.1	CDY37020	AT2G44950.1	21798944
AT4G15545.1	CDX67751	AT3G58560.1	21798944
AT4G15545.1	CDX98303	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033493.1-P	Field mustard	nucleus	97.91	97.91
CDY65145	Canola	nucleus	94.63	94.91
AT4G15545.1	Thale cress	nucleus	84.18	83.68
VIT_05s0020g02240.t01	Wine grape	nucleus	59.1	59.64
KRH11308	Soybean	nucleus	57.61	58.13
KRH02166	Soybean	nucleus	59.1	57.89
KRH50950	Soybean	nucleus	59.4	57.85
Solyc01g080510.2.1	Tomato	nucleus	56.72	57.75
PGSC0003DMT400081752	Potato	nucleus	56.42	57.27
Os05t0406000-01	Rice	plasma membrane	28.06	54.02
GSMUA_Achr11P...	Banana	cytosol	50.75	51.05
TraesCS1A01G254400.1	Wheat	cytosol	47.46	47.32
TraesCS1D01G253800.1	Wheat	cytosol	47.46	47.32
TraesCS1B01G263900.1	Wheat	cytosol	47.16	47.02
Zm00001d010314_P001	Maize	nucleus	46.27	45.99
Zm00001d038155_P001	Maize	nucleus	46.57	45.75
KXG21969	Sorghum	cytosol	47.46	40.56
CDY54262	Canola	nucleus	36.72	40.33
CDY63493	Canola	nucleus	36.12	39.54
CDY40055	Canola	cytosol	37.01	37.46
CDY66795	Canola	cytosol	26.57	36.78

Protein Annotations

EnsemblPlants:CDY22903	EnsemblPlantsGene:GSBRNA2T00021273001	GO:A0A078GE38	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:WAT1-related	ncoils:Coil	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43	ProteinID:CDY22903	ProteinID:CDY22903.1
SEG:seg	UniParc:UPI0004EF485C	UniProt:A0A078GE38	MapMan:13.7.2.4	:	:

Description

BnaA01g18410DBnaA01g18410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE38]

Coordinates

chrLK032137:-:276419..278506

Molecular Weight (calculated)

36922.7 Da

IEP (calculated)

4.776

GRAVY (calculated)

-0.687

Length

335 amino acids

Sequence
(BLAST)

001: MSDVEQEEET SSAVRGSISF DLPEEVLQVL PSDPFEQLDV ARKITSIALS TRVSALESES SDLRELLAEK DKEISELQSH VESLDASLSD ALQKLSLAED
101: EKENLVRENS SLSSTVKRLQ RDVSKLEGFR KTLMMSLQDD DQNAGTTQII AKPTPNDEDS PFQPSRHSSI QSQASEAVEP AAVDNEKDAA PKPSLSNSFP
201: LVSQTATPRL TPPGSPPALS ASSTPKTTSR PISPRRHSVS FSTTRGMFDD NRSSISISEP GSHTGRTRVD GKEFFRQVRS RLSYEQFGAF LGNVKDLNAH
301: KQTKDETLRK AEEIFGTDNR DLYVIFEGLI TRNAH

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.