CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67751
CDX74700
CDX98303
CDY18962
CDY27400
CDY37020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	CDX74700	AT2G44950.1	21798944
AT4G15545.1	CDY18962	AT2G44950.1	21798944
AT4G15545.1	CDY27400	AT2G44950.1	21798944
AT4G15545.1	CDY37020	AT2G44950.1	21798944
AT4G15545.1	CDX67751	AT3G58560.1	21798944
AT4G15545.1	CDX98303	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22903	Canola	nucleus	94.91	94.63
Bra033493.1-P	Field mustard	nucleus	94.01	93.73
AT4G15545.1	Thale cress	nucleus	87.72	86.94
VIT_05s0020g02240.t01	Wine grape	nucleus	60.18	60.54
KRH11308	Soybean	nucleus	58.68	59.04
Solyc01g080510.2.1	Tomato	nucleus	58.08	58.97
PGSC0003DMT400081752	Potato	nucleus	58.08	58.79
KRH50950	Soybean	nucleus	60.18	58.43
KRH02166	Soybean	nucleus	59.58	58.19
Os05t0406000-01	Rice	plasma membrane	28.14	54.02
GSMUA_Achr11P...	Banana	cytosol	51.2	51.35
TraesCS1A01G254400.1	Wheat	cytosol	47.6	47.32
TraesCS1D01G253800.1	Wheat	cytosol	47.6	47.32
TraesCS1B01G263900.1	Wheat	cytosol	47.31	47.02
Zm00001d010314_P001	Maize	nucleus	47.01	46.59
Zm00001d038155_P001	Maize	nucleus	46.71	45.75
KXG21969	Sorghum	cytosol	48.5	41.33
CDY54262	Canola	nucleus	37.13	40.66
CDY63493	Canola	nucleus	36.53	39.87
CDY40055	Canola	cytosol	37.43	37.76
CDY66795	Canola	cytosol	26.95	37.19

Protein Annotations

MapMan:13.7.2.4	GO:A0A078JF97	UniProt:A0A078JF97	EnsemblPlants:CDY65145	ProteinID:CDY65145	ProteinID:CDY65145.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00044239001	PANTHER:PTHR31218
PANTHER:PTHR31218:SF43	UniParc:UPI0004EF3F1F	InterPro:WAT1-related	SEG:seg	:	:

Description

BnaC01g41860DBnaC01g41860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JF97]

Coordinates

chrLK034669:-:2352..4335

Molecular Weight (calculated)

36829.6 Da

IEP (calculated)

4.720

GRAVY (calculated)

-0.700

Length

334 amino acids

Sequence
(BLAST)

001: MSDVEQEEET SSAVRGSISF DLPEEVLQVL PSDPFEQLDV ARKITSIALS TRVSALESES SDLRELLAEK DKEISELQSH VESLDASLSD ALQKLSLAED
101: EKENLVRENS SLSSTVKRLQ RDVSKLEGFR KTLMMSLQDD DQNAGTTQII AKPTPNDEDS PFQPSRHSSI QSQASEAVEP APVDNENEAP KPSLSNSLPL
201: VSQTATPRLT PPGSPPALSA SSTPKTTSRP ISPRRHSVSF STTRGMFDDN RSSISISEPG SHTGRTRVDG KEFFRQVRSR LSYEQFGAFL GNVKDLNAHK
301: QTKDETLRKA EEIFGSDNRD LYVIFEGLIT RNAH

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.