CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88892
KXG40109
OQU91798

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	EER88892	AT2G44950.1	21798944
AT4G15545.1	KXG40109	AT3G58560.1	21798944
AT4G15545.1	OQU91798	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010314_P001	Maize	nucleus	69.13	80.42
Zm00001d038155_P001	Maize	nucleus	68.11	78.3
Os05t0406000-01	Rice	plasma membrane	29.85	67.24
TraesCS1B01G263900.1	Wheat	cytosol	57.4	66.96
TraesCS1D01G253800.1	Wheat	cytosol	56.89	66.37
TraesCS1A01G254400.1	Wheat	cytosol	56.89	66.37
Solyc01g080510.2.1	Tomato	nucleus	45.15	53.8
PGSC0003DMT400081752	Potato	nucleus	45.15	53.64
VIT_05s0020g02240.t01	Wine grape	nucleus	44.13	52.11
KRH02166	Soybean	nucleus	44.9	51.46
KRH50950	Soybean	nucleus	44.13	50.29
KRH11308	Soybean	nucleus	42.09	49.7
AT4G15545.1	Thale cress	nucleus	42.09	48.96
GSMUA_Achr11P...	Banana	cytosol	41.33	48.65
CDY65145	Canola	nucleus	41.33	48.5
CDY22903	Canola	nucleus	40.56	47.46
Bra033493.1-P	Field mustard	nucleus	40.05	46.87
EER91123	Sorghum	cytosol	34.95	39.6
EES12856	Sorghum	nucleus	32.14	37.39
OQU87614	Sorghum	cytosol	32.91	36.96

Protein Annotations

EnsemblPlants:KXG21969	EnsemblPlantsGene:SORBI_3009G133700	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:WAT1-related
ncoils:Coil	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43	ProteinID:KXG21969	ProteinID:KXG21969.1	SEG:seg
UniParc:UPI00081ACE66	UniProt:A0A1B6P889	MapMan:13.7.2.4	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:48803047..48806567

Molecular Weight (calculated)

42792.5 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.629

Length

392 amino acids

Sequence
(BLAST)

001: MAEEGEEAVP PAAATVVGEE DAPAGEAPAP AVDYFGLPAE LVSVLPSDPF AQLDVARRIT SIALSHRLGL LEAEAARLRS QLAERDAEAE DLRERVEQLD
101: AALAVATGRG AAEAALLRSQ LAERDAEAED LRERVEQLDA ALAVATGRLR RAEEEKEALQ RDNSALSNTV TKLNRDVAKL EVFRKTLVQS LQEDDSSDNT
201: VPGARVAATS NFSSAPSDED SAFPTSKSSQ ISETASSVSE ENSQVDPDGP RPPRPGRPHV FLPSYNSTPR MTPPGSPPRR YASVSPPRRH SISVTSMNML
301: NDRSSGFSGQ HTSPFDAPSQ TGRTRVDGKE FFRNVRNRLS YEQFGAFLTN VKELNAHRQT REDTLRKADE IFGPENKDLY TIFESLITRN IR

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.