CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033261_P001	Maize	cytosol	20.47	87.34
Zm00001d026302_P002	Maize	nucleus	85.46	87.01
Zm00001d029987_P001	Maize	cytosol	24.63	85.57
Os04t0616000-01	Rice	nucleus	78.04	84.29
Zm00001d002315_P003	Maize	cytosol	81.9	83.13
TraesCS2A01G419200.1	Wheat	cytosol	81.31	82.78
TraesCS2D01G416200.1	Wheat	cytosol	81.01	82.48
TraesCS2B01G437900.2	Wheat	cytosol	81.31	82.04
KRH13038	Soybean	nucleus	54.01	53.69
GSMUA_Achr6P20060_001	Banana	nucleus	53.41	53.41
KRH44865	Soybean	nucleus	52.82	52.51
AT1G56080.1	Thale cress	nucleus	47.77	51.94
CDY54262	Canola	nucleus	46.59	51.48
CDY63493	Canola	nucleus	46.29	50.98
Bra040781.1-P	Field mustard	nucleus	46.29	50.98
CDY66795	Canola	cytosol	36.5	50.83
EER91123	Sorghum	cytosol	51.93	50.58
PGSC0003DMT400029232	Potato	nucleus	51.34	50.44
VIT_19s0027g01640.t01	Wine grape	nucleus	51.04	50.29
AT1G16520.1	Thale cress	cytosol	48.37	50.15
Solyc10g005580.2.1	Tomato	nucleus	51.04	50.15
CDY40055	Canola	cytosol	48.66	49.55
Bra026043.1-P	Field mustard	cytosol	48.37	49.24
PGSC0003DMT400056890	Potato	nucleus	49.85	49.12
OQU87614	Sorghum	cytosol	50.74	49.0
Solyc07g066520.2.1	Tomato	nucleus	50.45	47.09
HORVU2Hr1G098580.1	Barley	cytosol	51.04	46.36
KXG21969	Sorghum	cytosol	37.39	32.14

Protein Annotations

MapMan:13.7.2.4	EntrezGene:8072345	UniProt:C5YG14	ncoils:Coil	EnsemblPlants:EES12856	ProteinID:EES12856
ProteinID:EES12856.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
PANTHER:PTHR31218	PANTHER:PTHR31218:SF32	EnsemblPlantsGene:SORBI_3006G215100	unigene:Sbi.9102	UniParc:UPI0001A87620	InterPro:WAT1-related
RefSeq:XP_002448528.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:56326378..56330018

Molecular Weight (calculated)

37070.1 Da

IEP (calculated)

9.453

GRAVY (calculated)

-0.720

Length

337 amino acids

Sequence
(BLAST)

001: MARHEASASA AAAVPGVDFH LPDEILAVIP TDPYEQLDVA RKITSMAIAS RVSRLEADAT RLRRDLADRD RAEAELRARL ADSDARLAAA LDENAKLAKE
101: RDSLAATTKK LARNLAKLEA FKKQLMKSLS EDNLLQLSET SQDHNGEDNL TARVPSWKDE VSSSNTSSDT SSRSTMTESV HGGGYKFSIT SYMPPKLTPG
201: STPMISSSSG SPRAYSTGPP SPKFLSGPTS PTKTRSESQL TFSSWQGSSS HQYSAPTSPP QRHSFTGRPR IDGKEFFRQA RTRLSYEQFG AFLANIKEFN
301: AQKQSREDTL SKAEEIFGAE HKDLYISFQN MLNRNQS

Best Arabidopsis Sequence Match ( AT1G56080.1 )
(BLAST)

001: MSQSGGDFNL SDEILAVIPT DPYDQLDLAR KITSMAIASR VSNLESQVSG LRQKLLEKDR LVHELEDRVS SFERLYHEAD SSLKNVVDEN MKLTQERDSL
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR

Arabidopsis Description

At1g56080 [Source:UniProtKB/TrEMBL;Acc:Q0IGM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.