Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026043.1-P | Field mustard | cytosol | 88.92 | 87.31 |
| CDY40055 | Canola | cytosol | 88.0 | 86.4 |
| CDY66795 | Canola | cytosol | 64.0 | 85.95 |
| Os03t0659800-01 | Rice | plastid | 27.38 | 67.94 |
| KRH13038 | Soybean | nucleus | 64.92 | 62.24 |
| KRH44865 | Soybean | nucleus | 64.62 | 61.95 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 64.92 | 61.7 |
| AT1G56080.1 | Thale cress | nucleus | 57.54 | 60.32 |
| PGSC0003DMT400029232 | Potato | nucleus | 62.77 | 59.48 |
| Solyc10g005580.2.1 | Tomato | nucleus | 62.15 | 58.89 |
| PGSC0003DMT400056890 | Potato | nucleus | 61.54 | 58.48 |
| Solyc07g066520.2.1 | Tomato | nucleus | 61.23 | 55.12 |
| GSMUA_Achr9P26210_001 | Banana | cytosol | 56.31 | 53.35 |
| EER91123 | Sorghum | cytosol | 56.62 | 53.18 |
| Zm00001d033465_P001 | Maize | cytosol | 55.69 | 52.92 |
| Zm00001d013624_P001 | Maize | cytosol | 55.69 | 52.77 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 54.15 | 51.46 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 53.54 | 51.03 |
| Zm00001d029987_P001 | Maize | cytosol | 15.08 | 50.52 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 51.69 | 50.15 |
| Os04t0616000-01 | Rice | nucleus | 47.38 | 49.36 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 50.77 | 48.96 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 49.54 | 48.64 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 49.54 | 48.64 |
| EES12856 | Sorghum | nucleus | 50.15 | 48.37 |
| Zm00001d026302_P002 | Maize | nucleus | 49.23 | 48.34 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 49.23 | 47.9 |
| Os01t0768300-00 | Rice | cytosol | 50.77 | 47.55 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 47.08 | 47.22 |
| OQU87614 | Sorghum | cytosol | 50.46 | 46.99 |
| Zm00001d002315_P003 | Maize | cytosol | 47.69 | 46.69 |
| Zm00001d033261_P001 | Maize | cytosol | 11.08 | 45.57 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 48.92 | 42.63 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 48.92 | 42.51 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 48.31 | 41.87 |
| AT4G15545.1 | Thale cress | nucleus | 39.38 | 37.98 |
| Zm00001d043333_P001 | Maize | mitochondrion | 40.62 | 37.18 |
| Zm00001d043760_P001 | Maize | cytosol | 10.77 | 32.41 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 33.23 | 29.11 |
| Zm00001d019442_P001 | Maize | cytosol | 13.85 | 27.95 |
| Zm00001d038230_P001 | Maize | cytosol | 16.0 | 21.67 |
| Zm00001d003628_P001 | Maize | plastid | 12.0 | 20.74 |
Protein Annotations
| MapMan:13.7.2.4 | EntrezGene:838222 | UniProt:A0A178W1A5 | ProteinID:AAD34703.1 | ProteinID:AEE29465.1 | EMBL:AK118669 |
| ArrayExpress:AT1G16520 | EnsemblPlantsGene:AT1G16520 | RefSeq:AT1G16520 | TAIR:AT1G16520 | RefSeq:AT1G16520-TAIR-G | EnsemblPlants:AT1G16520.1 |
| TAIR:AT1G16520.1 | Unigene:At.28238 | EMBL:BT008348 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | RefSeq:NP_564000.2 | ProteinID:OAP11864.1 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31218 |
| PANTHER:PTHR31218:SF134 | UniProt:Q9SA50 | UniParc:UPI00000AC737 | InterPro:WAT1-related | SEG:seg | : |
Description
At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
Coordinates
chr1:+:5648636..5651167
Molecular Weight (calculated)
36428.0 Da
IEP (calculated)
9.215
GRAVY (calculated)
-0.726
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.