Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66795 | Canola | cytosol | 71.6 | 97.93 |
| Bra026043.1-P | Field mustard | cytosol | 97.89 | 97.89 |
| AT1G16520.1 | Thale cress | cytosol | 86.4 | 88.0 |
| Os03t0659800-01 | Rice | plastid | 28.1 | 70.99 |
| KRH13038 | Soybean | nucleus | 63.75 | 62.24 |
| KRH44865 | Soybean | nucleus | 63.44 | 61.95 |
| PGSC0003DMT400029232 | Potato | nucleus | 63.44 | 61.22 |
| Solyc10g005580.2.1 | Tomato | nucleus | 62.84 | 60.64 |
| PGSC0003DMT400056890 | Potato | nucleus | 61.93 | 59.94 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 61.63 | 59.65 |
| CDY54262 | Canola | nucleus | 53.78 | 58.36 |
| Solyc07g066520.2.1 | Tomato | nucleus | 61.33 | 56.23 |
| CDY63493 | Canola | nucleus | 51.66 | 55.88 |
| GSMUA_Achr9P26210_001 | Banana | cytosol | 54.98 | 53.06 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 54.38 | 52.63 |
| Zm00001d033465_P001 | Maize | cytosol | 54.38 | 52.63 |
| EER91123 | Sorghum | cytosol | 54.68 | 52.31 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 53.47 | 51.91 |
| Zm00001d013624_P001 | Maize | cytosol | 53.78 | 51.9 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 52.27 | 51.64 |
| Zm00001d029987_P001 | Maize | cytosol | 15.11 | 51.55 |
| Os04t0616000-01 | Rice | nucleus | 47.13 | 50.0 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 49.24 | 49.24 |
| Zm00001d026302_P002 | Maize | nucleus | 49.24 | 49.24 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 49.24 | 49.24 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 49.85 | 48.96 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 49.24 | 48.8 |
| EES12856 | Sorghum | nucleus | 49.55 | 48.66 |
| Zm00001d002315_P003 | Maize | cytosol | 47.73 | 47.59 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 45.92 | 46.91 |
| Zm00001d033261_P001 | Maize | cytosol | 11.18 | 46.84 |
| Os01t0768300-00 | Rice | cytosol | 48.64 | 46.4 |
| OQU87614 | Sorghum | cytosol | 48.04 | 45.56 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 46.83 | 41.55 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 46.83 | 41.44 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 46.53 | 41.07 |
| CDY65145 | Canola | nucleus | 37.76 | 37.43 |
| CDY22903 | Canola | nucleus | 37.46 | 37.01 |
| Zm00001d043333_P001 | Maize | mitochondrion | 38.67 | 36.06 |
| Zm00001d043760_P001 | Maize | cytosol | 10.57 | 32.41 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 33.53 | 29.92 |
| Zm00001d019442_P001 | Maize | cytosol | 12.99 | 26.71 |
| Zm00001d003628_P001 | Maize | plastid | 11.18 | 19.68 |
| Zm00001d038230_P001 | Maize | cytosol | 14.2 | 19.58 |
Protein Annotations
| MapMan:13.7.2.4 | GO:A0A078HNH4 | UniProt:A0A078HNH4 | EnsemblPlants:CDY40055 | ProteinID:CDY40055 | ProteinID:CDY40055.1 |
| ncoils:Coil | InterPro:DUF2046 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00068960001 |
| PFAM:PF09755 | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF134 | UniParc:UPI0004EE3FBF | InterPro:WAT1-related | SEG:seg |
Description
BnaC05g12600DBnaC05g12600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNH4]
Coordinates
chrLK032462:-:299398..301752
Molecular Weight (calculated)
36989.6 Da
IEP (calculated)
9.706
GRAVY (calculated)
-0.747
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDDRLDLEL SDEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLQGKET VVRELVDKAS RLEKDRREAD SRLKTVLEEN MILTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESA PPQTEPVDIK ACDQSSTGST GSYTGKDERT SVHSTHRSYS GSSDMNNPTV EASKYAGNKF SMTPYISPRL
201: TPSATPKIIS TSVSPRGYSA AGSPKRTSGA VSPTKTTIWY PSSQQSSAAN SPPRNRTLPA RTPRMDGKEF FRQARSRLSY EQFSAFLANI KELNAQKQTR
301: EDTLRKADEI FGEENKDLYL SFQGLLNRNM R
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESA PPQTEPVDIK ACDQSSTGST GSYTGKDERT SVHSTHRSYS GSSDMNNPTV EASKYAGNKF SMTPYISPRL
201: TPSATPKIIS TSVSPRGYSA AGSPKRTSGA VSPTKTTIWY PSSQQSSAAN SPPRNRTLPA RTPRMDGKEF FRQARSRLSY EQFSAFLANI KELNAQKQTR
301: EDTLRKADEI FGEENKDLYL SFQGLLNRNM R
001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
Arabidopsis Description
At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.