Factsheet for TraesCS4A01G297400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G014700.1	Wheat	cytosol	96.12	94.43
TraesCS4B01G016300.1	Wheat	cytosol	95.22	93.27
Os03t0659800-01	Rice	plastid	36.42	93.13
EER91123	Sorghum	cytosol	78.51	76.01
Zm00001d033465_P001	Maize	cytosol	77.31	75.73
Zm00001d013624_P001	Maize	cytosol	74.33	72.59
CDY66795	Canola	cytosol	42.39	58.68
VIT_19s0027g01640.t01	Wine grape	nucleus	54.93	53.8
Solyc10g005580.2.1	Tomato	nucleus	54.93	53.64
KRH13038	Soybean	nucleus	54.03	53.39
KRH44865	Soybean	nucleus	54.03	53.39
GSMUA_Achr9P26210_001	Banana	cytosol	54.33	53.06
Zm00001d043760_P001	Maize	cytosol	17.01	52.78
CDY40055	Canola	cytosol	51.64	52.27
Bra026043.1-P	Field mustard	cytosol	51.64	52.27
PGSC0003DMT400029232	Potato	nucleus	53.43	52.19
AT1G16520.1	Thale cress	cytosol	50.15	51.69
PGSC0003DMT400056890	Potato	nucleus	51.94	50.88
AT1G56080.1	Thale cress	nucleus	45.97	49.68
TraesCS2A01G419200.1	Wheat	cytosol	48.06	48.64
Solyc07g066520.2.1	Tomato	nucleus	51.94	48.2
CDY63493	Canola	nucleus	43.28	47.39
Bra040781.1-P	Field mustard	nucleus	43.28	47.39
CDY54262	Canola	nucleus	42.99	47.21
TraesCS3A01G298500.1	Wheat	nucleus	51.34	46.11
Zm00001d019442_P001	Maize	cytosol	20.3	42.24
TraesCS1A01G254400.1	Wheat	cytosol	37.01	36.9
Zm00001d003628_P001	Maize	plastid	17.91	31.91
Zm00001d038230_P001	Maize	cytosol	20.9	29.17

Protein Annotations

EnsemblPlants:TraesCS4A01G297400.1	EnsemblPlantsGene:TraesCS4A01G297400	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:WAT1-related	ncoils:Coil
PANTHER:PTHR31218	PANTHER:PTHR31218:SF76	SEG:seg	MapMan:13.7.2.4	:	:

Description

No Description!

Coordinates

chr4A:+:596767433..596769827

Molecular Weight (calculated)

36647.2 Da

IEP (calculated)

9.693

GRAVY (calculated)

-0.669

Length

335 amino acids

Sequence
(BLAST)

001: MPPAEGAEGL GVSEFALPDG VLAVLPRDPY EQLDLARRIT ALAVAGRVTG LEREGAAERD RENAELRDRV ALLDRALQET NARLQARTIL QIQLSKERDS
101: LAQTSKKQAR DLHKLESFKR HLMQSLRDDS TSPQETVDIT TCDQSVSSKT SSCGDGSISH TAANLLNGSG DLGSTTREVA RPPLQKYALS PHINQRLTPE
201: ATPNIMSTSA SPRGMSTTAT PKLVSGATSP SRTRIEGHMS MTPWYSSKQS SAANSPPRGR PNPGRTPRID GKEFFRQARS RLSCEQFGAF LANIKELNAH
301: KQSREETLKK AEEIFGPDSK DLYLSFQGLL NRSLP

Best Arabidopsis Sequence Match ( AT1G16520.1 )
(BLAST)

001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR

Arabidopsis Description

At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.