Factsheet for TraesCS2A01G419200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G416200.1	Wheat	cytosol	98.79	98.79
TraesCS2B01G437900.2	Wheat	cytosol	98.19	97.31
Os04t0616000-01	Rice	nucleus	79.46	84.29
Zm00001d033261_P001	Maize	cytosol	19.64	82.28
EES12856	Sorghum	nucleus	82.78	81.31
Zm00001d029987_P001	Maize	cytosol	23.57	80.41
Zm00001d026302_P002	Maize	nucleus	79.46	79.46
Zm00001d002315_P003	Maize	cytosol	76.74	76.51
HORVU2Hr1G098580.1	Barley	cytosol	60.73	54.18
KRH13038	Soybean	nucleus	54.38	53.1
AT1G56080.1	Thale cress	nucleus	49.24	52.58
GSMUA_Achr6P20060_001	Banana	nucleus	53.47	52.52
CDY54262	Canola	nucleus	48.04	52.13
Bra040781.1-P	Field mustard	nucleus	48.04	51.96
CDY63493	Canola	nucleus	48.04	51.96
KRH44865	Soybean	nucleus	53.17	51.92
VIT_19s0027g01640.t01	Wine grape	nucleus	53.47	51.75
CDY66795	Canola	cytosol	36.86	50.41
PGSC0003DMT400029232	Potato	nucleus	51.66	49.85
AT1G16520.1	Thale cress	cytosol	48.64	49.54
PGSC0003DMT400056890	Potato	nucleus	51.06	49.42
CDY40055	Canola	cytosol	49.24	49.24
Solyc10g005580.2.1	Tomato	nucleus	50.76	48.98
Bra026043.1-P	Field mustard	cytosol	48.94	48.94
TraesCS4A01G297400.1	Wheat	cytosol	48.64	48.06
Solyc07g066520.2.1	Tomato	nucleus	51.66	47.37
TraesCS3A01G298500.1	Wheat	nucleus	46.22	41.02
TraesCS1A01G254400.1	Wheat	cytosol	41.39	40.77

Protein Annotations

EnsemblPlants:TraesCS2A01G419200.1	EnsemblPlantsGene:TraesCS2A01G419200	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:WAT1-related	ncoils:Coil
PANTHER:PTHR31218	PANTHER:PTHR31218:SF32	SEG:seg	MapMan:13.7.2.4	:	:

Description

No Description!

Coordinates

chr2A:+:674529217..674532222

Molecular Weight (calculated)

36572.4 Da

IEP (calculated)

7.806

GRAVY (calculated)

-0.693

Length

331 amino acids

Sequence
(BLAST)

001: MARQEVAGAA TGVDFHLPDE ILAVIPTDPY EQLDVARKIT SMAIASRVSR LEADVARLRR DLADRDRGEA DLRARLADSD ARLLAALDEN AKLVKERDTL
101: ALTAKKLSRN LAKLEAFKKQ LMKSLSEDNL LQLSETGEDR DVDAENSGTA RSPSWKDEVS SSHTSSNTSS RSTITESAQG YQFSITPYVA PQITPGSTPI
201: ISSSSGSPLA YSTGPSTPKF YSGPTSPTRS RSEDQSAFSS WNGSSHQYSA PVSPQRRSFT GRPRIDGKEF FRQARTRLSY EQFGAFLANI KEFNAQKQSR
301: EDTLSKAEEI FGTEHKDLYI SFQNMLNRNQ S

Best Arabidopsis Sequence Match ( AT1G16520.1 )
(BLAST)

001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR

Arabidopsis Description

At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.