Factsheet for Os04t0616000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033261_P001	Maize	cytosol	21.79	86.08
Zm00001d029987_P001	Maize	cytosol	25.96	83.51
TraesCS2A01G419200.1	Wheat	cytosol	84.29	79.46
TraesCS2D01G416200.1	Wheat	cytosol	83.97	79.15
TraesCS2B01G437900.2	Wheat	cytosol	84.62	79.04
EES12856	Sorghum	nucleus	84.29	78.04
Zm00001d026302_P002	Maize	nucleus	79.81	75.23
Zm00001d002315_P003	Maize	cytosol	74.68	70.18
Os03t0659800-01	Rice	plastid	24.04	57.25
KRH13038	Soybean	nucleus	56.41	51.92
GSMUA_Achr6P20060_001	Banana	nucleus	55.77	51.63
CDY54262	Canola	nucleus	50.32	51.48
KRH44865	Soybean	nucleus	55.45	51.03
Bra040781.1-P	Field mustard	nucleus	49.68	50.65
CDY63493	Canola	nucleus	49.68	50.65
VIT_19s0027g01640.t01	Wine grape	nucleus	55.13	50.29
AT1G56080.1	Thale cress	nucleus	49.36	49.68
PGSC0003DMT400029232	Potato	nucleus	54.17	49.27
Solyc10g005580.2.1	Tomato	nucleus	53.53	48.69
CDY66795	Canola	cytosol	37.18	47.93
PGSC0003DMT400056890	Potato	nucleus	52.24	47.66
AT1G16520.1	Thale cress	cytosol	49.36	47.38
Os01t0768300-00	Rice	cytosol	52.56	47.26
CDY40055	Canola	cytosol	50.0	47.13
Bra026043.1-P	Field mustard	cytosol	49.68	46.83
Solyc07g066520.2.1	Tomato	nucleus	53.21	45.98
HORVU2Hr1G098580.1	Barley	cytosol	51.28	43.13
Os05t0406000-01	Rice	plasma membrane	19.87	35.63
Os01t0768200-01	Rice	plasma membrane	8.33	9.45

Protein Annotations

MapMan:13.7.2.4	EntrezGene:4336994	ProteinID:BAF15788.1	ProteinID:BAS91006.1	ProteinID:CAD41798.2	ncoils:Coil
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:Os04g0616000
EnsemblPlants:Os04t0616000-01	PANTHER:PTHR31218	PANTHER:PTHR31218:SF32	UniProt:Q7XTS1	UniParc:UPI000021C822	InterPro:WAT1-related
RefSeq:XP_015634057.1	SEG:seg	:	:	:	:

Description

Similar to H0525G02.7 protein. (Os04t0616000-01)

Coordinates

chr4:-:31254843..31257934

Molecular Weight (calculated)

34777.4 Da

IEP (calculated)

8.009

GRAVY (calculated)

-0.716

Length

312 amino acids

Sequence
(BLAST)

001: MGRHEAAAGV VDFHLPDEIL AVIPTDPYEQ LDVARKITSM AIASRVSRLE ADAARLRRDL ADRDRAEADL RARLADSDAR LLAALDENAK LAKERDSLAS
101: TAKKMARNLA KLEAFKKQLM KSLSEDNLLQ LSEIGDDRDF DANNNLTARV PSWKDEVSSS RTSADSSSRS TMTESAQEHQ FSVTPYTAPK LTPGSTPKFL
201: SGPTSPTKSL SEVHSTFSSW HGSSSHQYSA PTSPPQHRSF AGRPRIDGKE FFRQARTRLS YEQFGAFLAN IKEFNAQKQS REDTLSKAEE IFGTEHKDLY
301: ISFQNMLNRN HS

Best Arabidopsis Sequence Match ( AT1G56080.1 )
(BLAST)

001: MSQSGGDFNL SDEILAVIPT DPYDQLDLAR KITSMAIASR VSNLESQVSG LRQKLLEKDR LVHELEDRVS SFERLYHEAD SSLKNVVDEN MKLTQERDSL
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR

Arabidopsis Description

At1g56080 [Source:UniProtKB/TrEMBL;Acc:Q0IGM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.