Factsheet for Os01t0768200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0768300-00	Rice	cytosol	14.18	11.24
Os05t0406000-01	Rice	plasma membrane	6.55	10.34
Os03t0659800-01	Rice	plastid	4.0	8.4
Os04t0616000-01	Rice	nucleus	9.45	8.33

Protein Annotations

MapMan:35.2	EntrezGene:4325505	EMBL:AK103291	ProteinID:BAF06279.1	ProteinID:BAS74529.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	InterPro:IPR006634	EnsemblPlantsGene:Os01g0768200	EnsemblPlants:Os01t0768200-01	PFAM:PF03798
PFscan:PS50922	PANTHER:PTHR13439	PANTHER:PTHR13439:SF18	UniProt:Q0JIZ9	SMART:SM00724	InterPro:TLC-dom
TMHMM:TMhelix	UniParc:UPI0000DD8D3D	RefSeq:XP_015638491.1	RefSeq:XP_015638541.1	SEG:seg	:

Description

TRAM, LAG1 and CLN8 homology domain containing protein. (Os01t0768200-01)

Coordinates

chr1:-:32381348..32385675

Molecular Weight (calculated)

31447.1 Da

IEP (calculated)

9.335

GRAVY (calculated)

0.545

Length

275 amino acids

Sequence
(BLAST)

001: MMDLSTTSVV AAKAYKYRAE SLVKDYLLAD CYVSYTAVLG GILMCKMVYD ITHLISSLYY KGYGSLTKIQ KLEWNNRGMS TVHAMFITLM SVYLVFFSNL
101: FSDELDGPVT VRSSNLSNFT LGVSLGYFIA DLAMLSWAYP SLGGMEYVLH HLLSIISLVY AIYSEEGQLY TYMVLISETT TPGINLRWFL DTVGMKRSKA
201: YLVNGVTMFV AWLVARIILF IYLFYHIYFH IDQVKQMRTF SCILIFAVPT ILLVMNTVWF VKILRGLKKT LAKRQ

Best Arabidopsis Sequence Match ( AT1G31300.2 )
(BLAST)

001: MSTTSLQTIG AIKSYHHQAQ HLVKNYLLAD PFIPYTSVLT GIFLCKVVYD LCHFISNSHS KTYIILTKIQ RIEWNNRGIS TVHAIFISAM SLYFVFWSDL
101: FSDRWHNDLV VFRSSRLSSL GLGISIGYFL ADLGMIFWKY PSLGGIEYIV HHSLSGVAVA YSLFSGEGQL YTYMVLISEI TTPEINLRWY LDTAGMKKSL
201: AYVVNGVFIF LAWLVARILL FIYMFYHVYL HYNQVMRMHI FGYVLVFGVP AALGVMNLIW FGKIVRGVKK TLAKRCEC

Arabidopsis Description

At1g31300/T19E23_12 [Source:UniProtKB/TrEMBL;Acc:Q93Z82]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.