Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0166800-01 | |
| Os04t0550400-01 | |
| Os10t0412100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G15545.1 | Os04t0550400-01 | AT2G44950.1 | 21798944 |
| AT4G15545.1 | Os03t0166800-01 | AT3G58560.1 | 21798944 |
| AT4G15545.1 | Os10t0412100-01 | AT3G58560.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0659800-01 | Rice | plastid | 34.48 | 45.8 |
| Zm00001d010314_P001 | Maize | nucleus | 67.82 | 35.01 |
| TraesCS1D01G253800.1 | Wheat | cytosol | 66.67 | 34.52 |
| TraesCS1A01G254400.1 | Wheat | cytosol | 66.67 | 34.52 |
| Zm00001d038155_P001 | Maize | nucleus | 67.24 | 34.31 |
| TraesCS1B01G263900.1 | Wheat | cytosol | 66.09 | 34.23 |
| VIT_05s0020g02240.t01 | Wine grape | nucleus | 59.2 | 31.02 |
| KRH02166 | Soybean | nucleus | 60.34 | 30.7 |
| KRH50950 | Soybean | nucleus | 59.77 | 30.23 |
| KXG21969 | Sorghum | cytosol | 67.24 | 29.85 |
| PGSC0003DMT400081752 | Potato | nucleus | 56.32 | 29.7 |
| KRH11308 | Soybean | nucleus | 56.32 | 29.52 |
| Solyc01g080510.2.1 | Tomato | nucleus | 55.75 | 29.48 |
| GSMUA_Achr11P... | Banana | cytosol | 56.32 | 29.43 |
| CDY65145 | Canola | nucleus | 54.02 | 28.14 |
| Bra033493.1-P | Field mustard | nucleus | 54.02 | 28.06 |
| CDY22903 | Canola | nucleus | 54.02 | 28.06 |
| AT4G15545.1 | Thale cress | nucleus | 53.45 | 27.6 |
| Os01t0768300-00 | Rice | cytosol | 40.23 | 20.17 |
| Os04t0616000-01 | Rice | nucleus | 35.63 | 19.87 |
| Os01t0768200-01 | Rice | plasma membrane | 10.34 | 6.55 |
Protein Annotations
| MapMan:13.7.2.4 | ProteinID:BAF17425.1 | ProteinID:BAS93955.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0022857 | GO:GO:0055085 | EnsemblPlantsGene:Os05g0406000 | EnsemblPlants:Os05t0406000-01 | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF43 |
| UniProt:Q0DI98 | UniParc:UPI0000E124C5 | InterPro:WAT1-related | SEG:seg | : | : |
Description
Conserved hypothetical protein. (Os05t0406000-01)
Coordinates
chr5:+:19777945..19780020
Molecular Weight (calculated)
19535.3 Da
IEP (calculated)
7.259
GRAVY (calculated)
-0.851
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: DEDSAFPVSK SSQLSETASS VSEESSHVEP DVPRPPRPHV FLPSYNSTPR VTPPDSPPRS FASISPPRRH SISITSRNLF DDRSSAYSGH SSVTSPFDAG
101: SHTGRTRVDG KEFFRQVRNR LSYEQFSAFL ANVKELNSHK QTREDTLRKA DEIFGPDNKD LYTIFEGLIT RNIH
101: SHTGRTRVDG KEFFRQVRNR LSYEQFSAFL ANVKELNSHK QTREDTLRKA DEIFGPDNKD LYTIFEGLIT RNIH
001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH
Arabidopsis Description
Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.