Factsheet for Solyc01g080510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g059010.2.1
Solyc10g078950.1.1
Solyc11g013370.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	Solyc11g013370.1.1	AT2G44950.1	21798944
AT4G15545.1	Solyc03g059010.2.1	AT3G58560.1	21798944
AT4G15545.1	Solyc10g078950.1.1	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081752	Potato	nucleus	96.66	96.36
VIT_05s0020g02240.t01	Wine grape	nucleus	63.83	63.25
KRH02166	Soybean	nucleus	64.13	61.7
KRH11308	Soybean	nucleus	61.7	61.14
KRH50950	Soybean	nucleus	63.83	61.05
CDY65145	Canola	nucleus	58.97	58.08
Bra033493.1-P	Field mustard	nucleus	58.36	57.31
CDY22903	Canola	nucleus	57.75	56.72
AT4G15545.1	Thale cress	nucleus	57.45	56.08
Os05t0406000-01	Rice	plasma membrane	29.48	55.75
GSMUA_Achr11P...	Banana	cytosol	53.19	52.55
TraesCS1B01G263900.1	Wheat	cytosol	52.28	51.19
TraesCS1D01G253800.1	Wheat	cytosol	52.28	51.19
TraesCS1A01G254400.1	Wheat	cytosol	51.98	50.89
Zm00001d038155_P001	Maize	nucleus	51.98	50.15
Zm00001d010314_P001	Maize	nucleus	51.06	49.85
KXG21969	Sorghum	cytosol	53.8	45.15
Solyc07g066520.2.1	Tomato	nucleus	39.21	35.73
Solyc10g005580.2.1	Tomato	nucleus	35.87	34.4

Protein Annotations

EnsemblPlants:Solyc01g080510.2.1	EnsemblPlantsGene:Solyc01g080510.2	Gene3D:3.40.50.300	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	InterPro:WAT1-related	ncoils:Coil	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43
SEG:seg	UniParc:UPI0002762537	UniProt:K4AXU5	MapMan:13.7.2.4	:	:

Description

No Description!

Coordinates

chr1:+:79757499..79762109

Molecular Weight (calculated)

36345.0 Da

IEP (calculated)

5.530

GRAVY (calculated)

-0.744

Length

329 amino acids

Sequence
(BLAST)

001: MATEFRLPEE IVQVLPSDPF EQLDLARKIT SIALSTRISA LESEADALRR HLSERDDIIN DLNSQLDSLD SSLADAADRL SRAEQEKESL VKENSMLSNT
101: VRKLNRDVAK LEAFRKTLMR SLNEEEDSSA GAPGFAKNGQ NQSDQDSSSP ASIPPQRTQS TEVGYSHSED AESETSRPRI SPGLLLASQT STPRLTPPGS
201: PPSLSASVSP SRSPRPLSPR RHSISFSTVR GMYDDRSSAF STSYNQHGSM SSLEAGSQTA RARVDGKEFF RQVRSRLSYE QFGGFLANVK ELNSHKQTKE
301: ETLRKAAEIF GEENKDLYTI FEGLISRNA

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.