CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96349
KRH30315
KRH38033
KRH68083
KRH71803
KRH71804
KRH75261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	KRH30315	AT2G44950.1	21798944
AT4G15545.1	KRH75261	AT2G44950.1	21798944
AT4G15545.1	KRG96349	AT3G58560.1	21798944
AT4G15545.1	KRH38033	AT3G58560.1	21798944
AT4G15545.1	KRH68083	AT3G58560.1	21798944
AT4G15545.1	KRH71803	AT3G58560.1	21798944
AT4G15545.1	KRH71804	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50950	Soybean	nucleus	88.01	87.5
KRH11308	Soybean	nucleus	66.67	68.67
Solyc01g080510.2.1	Tomato	nucleus	61.7	64.13
VIT_05s0020g02240.t01	Wine grape	nucleus	61.99	63.86
PGSC0003DMT400081752	Potato	nucleus	61.4	63.64
Os05t0406000-01	Rice	plasma membrane	30.7	60.34
Bra033493.1-P	Field mustard	nucleus	58.48	59.7
CDY65145	Canola	nucleus	58.19	59.58
CDY22903	Canola	nucleus	57.89	59.1
AT4G15545.1	Thale cress	nucleus	57.89	58.75
GSMUA_Achr11P...	Banana	cytosol	54.68	56.16
TraesCS1B01G263900.1	Wheat	cytosol	52.63	53.57
TraesCS1D01G253800.1	Wheat	cytosol	52.34	53.27
TraesCS1A01G254400.1	Wheat	cytosol	52.05	52.98
Zm00001d010314_P001	Maize	nucleus	50.88	51.63
Zm00001d038155_P001	Maize	nucleus	50.29	50.44
KXG21969	Sorghum	cytosol	51.46	44.9
KRH13038	Soybean	nucleus	40.94	41.3
KRH44865	Soybean	nucleus	40.64	41.0

Protein Annotations

EntrezGene:100787515	MapMan:13.7.2.4	EMBL:ACUP02010298	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G021100	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:I1MRC2	EnsemblPlants:KRH02166
ProteinID:KRH02166	ProteinID:KRH02166.1	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43	UniParc:UPI00023D4DF9	InterPro:WAT1-related
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:1554690..1558305

Molecular Weight (calculated)

37249.3 Da

IEP (calculated)

5.111

GRAVY (calculated)

-0.568

Length

342 amino acids

Sequence
(BLAST)

001: MAAESGGTPT NFDLPEEVVQ VLPSDPFQQL DVARKITSIA LSTRVNTLES ELSSLRAQIA DKDNLIADLQ SQLDSLDASL SQIADKLLQT EQDKESLLQE
101: NASLSNTVKK LNRDVSKLEV FRKTLMQSLQ EEDDNSGAAP DIVAKIQSQA SLTSTSQIGD NDVSLPPSVS SSTGNSFAKD HESDAIRPRV SQNLLLASQG
201: STPRITPPGS PPSLSASVSP TRTSKPVSPQ RHSISFATTR GMYDDRSSMF SSMSLTHGSI SSSDAGTGSQ TGRTRVDGKE FFRQVRNRLS YEQFGAFLAN
301: VKELNSHKQT KEETLRKADE IFGPENKDLY TIFEGLINRN LH

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.