Factsheet for Zm00001d010314_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014187_P011
Zm00001d014640_P035
Zm00001d027811_P001
Zm00001d032979_P003
Zm00001d036507_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	Zm00001d014640_P035	AT2G44950.1	21798944
AT4G15545.1	Zm00001d036507_P003	AT2G44950.1	21798944
AT4G15545.1	Zm00001d014187_P011	AT3G58560.1	21798944
AT4G15545.1	Zm00001d027811_P001	AT3G58560.1	21798944
AT4G15545.1	Zm00001d032979_P003	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038155_P001	Maize	nucleus	84.27	83.28
KXG21969	Sorghum	cytosol	80.42	69.13
Os05t0406000-01	Rice	plasma membrane	35.01	67.82
TraesCS1A01G254400.1	Wheat	cytosol	66.77	66.96
TraesCS1D01G253800.1	Wheat	cytosol	66.77	66.96
TraesCS1B01G263900.1	Wheat	cytosol	66.17	66.37
VIT_05s0020g02240.t01	Wine grape	nucleus	51.63	52.41
PGSC0003DMT400081752	Potato	nucleus	50.15	51.21
Solyc01g080510.2.1	Tomato	nucleus	49.85	51.06
KRH02166	Soybean	nucleus	51.63	50.88
KRH50950	Soybean	nucleus	51.34	50.29
GSMUA_Achr11P...	Banana	cytosol	48.37	48.95
KRH11308	Soybean	nucleus	48.07	48.8
AT4G15545.1	Thale cress	nucleus	48.37	48.37
CDY65145	Canola	nucleus	46.59	47.01
Bra033493.1-P	Field mustard	nucleus	45.99	46.27
CDY22903	Canola	nucleus	45.99	46.27
Zm00001d029987_P001	Maize	cytosol	12.46	43.3
Zm00001d033261_P001	Maize	cytosol	9.5	40.51
Zm00001d013624_P001	Maize	cytosol	40.95	40.23
Zm00001d033465_P001	Maize	cytosol	40.36	39.77
Zm00001d026302_P002	Maize	nucleus	37.39	38.07
Zm00001d043760_P001	Maize	cytosol	12.17	37.96
Zm00001d002315_P003	Maize	cytosol	37.39	37.95
Zm00001d019442_P001	Maize	cytosol	16.02	33.54
Zm00001d043333_P001	Maize	mitochondrion	30.86	29.3
Zm00001d003628_P001	Maize	plastid	13.95	25.0
Zm00001d038230_P001	Maize	cytosol	15.43	21.67

Protein Annotations

EMBL:BT039589	EnsemblPlants:Zm00001d010314_P001	EnsemblPlants:Zm00001d010314_T001	EnsemblPlantsGene:Zm00001d010314	EntrezGene:100272847	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	InterPro:WAT1-related	ncoils:Coil	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43
ProteinID:AQK93825.1	SEG:seg	UniParc:UPI00017B7CA0	UniProt:B4FR51	MapMan:13.7.2.4	:

Description

No Description!

Coordinates

chr8:-:109191593..109194518

Molecular Weight (calculated)

37438.4 Da

IEP (calculated)

5.542

GRAVY (calculated)

-0.754

Length

337 amino acids

Sequence
(BLAST)

001: MADEGEEGVP PAAMVGEAPT EDFGLPAELM AVLPSDPFAQ LDVARKITSI ALSHRLGRLE AEAARLRSQL AERDAEAEEL RERVEKLDSA LAVATGRLRR
101: AEEEKETLLR DNSALSNTVR KLNRDVAKLE VFKKTLVQSL QEDDSSDNTA PRASVAATSN FSAPSDEDSA FPTSKSSQIS ETASSVSEEN SQVEPDAPRP
201: PRPHVFLPSY NSTPRRTPPD SPPRRYASVS PPRRHSISVT SMNMFNDRSS GFSSQHSSPF DPPSQTGRTR VDGKEFFRHV RNRLSYEQFG AFLANVKELN
301: AHRQTREDTL RKADEIFGPE NKDLYTVFES LITRNIR

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.