Factsheet for PGSC0003DMT400081752

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029795

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	PGSC0003DMT400029795	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080510.2.1	Tomato	nucleus	96.36	96.66
VIT_05s0020g02240.t01	Wine grape	nucleus	63.94	63.55
KRH02166	Soybean	nucleus	63.64	61.4
KRH11308	Soybean	nucleus	61.52	61.14
KRH50950	Soybean	nucleus	63.33	60.76
CDY65145	Canola	nucleus	58.79	58.08
Bra033493.1-P	Field mustard	nucleus	57.88	57.01
CDY22903	Canola	nucleus	57.27	56.42
Os05t0406000-01	Rice	plasma membrane	29.7	56.32
AT4G15545.1	Thale cress	nucleus	57.27	56.08
GSMUA_Achr11P...	Banana	cytosol	53.94	53.45
TraesCS1B01G263900.1	Wheat	cytosol	53.03	52.08
TraesCS1D01G253800.1	Wheat	cytosol	53.03	52.08
TraesCS1A01G254400.1	Wheat	cytosol	52.73	51.79
Zm00001d038155_P001	Maize	nucleus	52.12	50.44
Zm00001d010314_P001	Maize	nucleus	51.21	50.15
KXG21969	Sorghum	cytosol	53.64	45.15
PGSC0003DMT400056890	Potato	nucleus	38.18	36.84
PGSC0003DMT400029232	Potato	nucleus	35.76	34.4

Protein Annotations

EnsemblPlants:PGSC0003DMT400081752	EnsemblPlantsGene:PGSC0003DMG400032104	EntrezGene:102592431	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:WAT1-related	ncoils:Coil	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43	PGSC:PGSC0003DMG400032104	RefSeq:XP_006365274.1
SEG:seg	SUPFAM:SSF90257	UniParc:UPI000296B4AF	UniProt:M1D504	MapMan:13.7.2.4	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032104]

Coordinates

chr1:-:60810121..60814678

Molecular Weight (calculated)

36407.9 Da

IEP (calculated)

5.193

GRAVY (calculated)

-0.796

Length

330 amino acids

Sequence
(BLAST)

001: MATEFDLPEE IVEVLPSDPF EQLDLARKIT SIALSTRISA LESEAAALRR HLSERDDIIN DLNSQLDSLD SSLADASDRL SRAEQEKESL VKENSTLSNT
101: VRKLNRDVAK LEAFRKTLMR SLNEEEDSSA GAPDFAKNGQ NQSDQDSSSQ ASRPPQRTQS TEGGYSHSED AESETSRPRI SPGLLLASQT STPRLTPPGS
201: PPSLSASVSP SRSPRPLSPR RHSISFSTVR GMYDDRSSAF STSYSQHGSM SGLEAGSQTA RARVDGKEFF RQVRSRLSYE QFGGFLANVK ELNSHKQTKE
301: ETLRKAAEIF GEENKDLYTI FEGLISRNAQ

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.