Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g066520.2.1 | Tomato | nucleus | 95.61 | 90.58 |
| PGSC0003DMT400029232 | Potato | nucleus | 75.15 | 74.93 |
| Os03t0659800-01 | Rice | plastid | 27.19 | 70.99 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 65.79 | 65.79 |
| KRH44865 | Soybean | nucleus | 65.2 | 65.78 |
| KRH13038 | Soybean | nucleus | 64.62 | 65.19 |
| CDY66795 | Canola | cytosol | 45.03 | 63.64 |
| Bra026043.1-P | Field mustard | cytosol | 59.94 | 61.93 |
| CDY40055 | Canola | cytosol | 59.94 | 61.93 |
| AT1G16520.1 | Thale cress | cytosol | 58.48 | 61.54 |
| AT1G56080.1 | Thale cress | nucleus | 54.09 | 59.68 |
| CDY54262 | Canola | nucleus | 53.22 | 59.67 |
| Bra040781.1-P | Field mustard | nucleus | 52.34 | 58.5 |
| CDY63493 | Canola | nucleus | 52.34 | 58.5 |
| Zm00001d029987_P001 | Maize | cytosol | 15.5 | 54.64 |
| EER91123 | Sorghum | cytosol | 55.26 | 54.62 |
| Zm00001d033465_P001 | Maize | cytosol | 54.09 | 54.09 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 52.92 | 52.92 |
| Zm00001d013624_P001 | Maize | cytosol | 52.63 | 52.48 |
| Os04t0616000-01 | Rice | nucleus | 47.66 | 52.24 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 51.46 | 52.23 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 52.05 | 52.2 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 50.88 | 51.94 |
| GSMUA_Achr9P26210_001 | Banana | cytosol | 52.05 | 51.9 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 49.42 | 51.06 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 49.12 | 50.76 |
| Zm00001d033261_P001 | Maize | cytosol | 11.7 | 50.63 |
| Zm00001d026302_P002 | Maize | nucleus | 48.83 | 50.45 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 49.12 | 50.3 |
| EES12856 | Sorghum | nucleus | 49.12 | 49.85 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 47.08 | 49.69 |
| Zm00001d002315_P003 | Maize | cytosol | 47.37 | 48.8 |
| Os01t0768300-00 | Rice | cytosol | 48.54 | 47.84 |
| OQU87614 | Sorghum | cytosol | 47.66 | 46.7 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 47.95 | 43.85 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 47.08 | 42.93 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 46.49 | 42.63 |
| PGSC0003DMT400081752 | Potato | nucleus | 36.84 | 38.18 |
| Zm00001d043333_P001 | Maize | mitochondrion | 39.47 | 38.03 |
| Zm00001d043760_P001 | Maize | cytosol | 11.4 | 36.11 |
| Zm00001d019442_P001 | Maize | cytosol | 14.04 | 29.81 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 32.16 | 29.65 |
| Zm00001d003628_P001 | Maize | plastid | 12.87 | 23.4 |
| Zm00001d038230_P001 | Maize | cytosol | 14.33 | 20.42 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400056890 | EnsemblPlantsGene:PGSC0003DMG400022123 | EntrezGene:102587581 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:WAT1-related | ncoils:Coil | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF134 | PGSC:PGSC0003DMG400022123 | RefSeq:XP_006346233.1 |
| SEG:seg | UniParc:UPI0002949F32 | UniProt:M1C010 | MapMan:13.7.2.4 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022123]
Coordinates
chr7:-:56538075..56542176
Molecular Weight (calculated)
38329.9 Da
IEP (calculated)
9.448
GRAVY (calculated)
-0.742
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MSENSIIESR RNAGPDFHLS DEMLSVIPTD PYDQLDLARK ITSMAIASRV TSLESEMDRL RQKLNGKDRV ILDLEDKVSQ LEQACHQAEL RLNITLQDNM
101: KLSKERDNLA FTAKKLGRDL AKLETFKRQL VQSLSDDDSS QAETVDIGIY DQSIHKSYPL KEEVNSYTVH HSFSGSVDGR GSNGDASNHS LQRFSSPYIT
201: PLLTPSDTPK ITSASVSPRR CSAAVSPRRT SGSTSPTIPQ FQRRVSMSSF YPSSQQSSAA NSPPRARPKP AQTPRADGKE FFRQARSRLS YEQFSAFLAN
301: IKELNAQKQS REETLKKAEE IFGTDNKDLY LSFQGMLNRG VR
101: KLSKERDNLA FTAKKLGRDL AKLETFKRQL VQSLSDDDSS QAETVDIGIY DQSIHKSYPL KEEVNSYTVH HSFSGSVDGR GSNGDASNHS LQRFSSPYIT
201: PLLTPSDTPK ITSASVSPRR CSAAVSPRRT SGSTSPTIPQ FQRRVSMSSF YPSSQQSSAA NSPPRARPKP AQTPRADGKE FFRQARSRLS YEQFSAFLAN
301: IKELNAQKQS REETLKKAEE IFGTDNKDLY LSFQGMLNRG VR
001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
Arabidopsis Description
At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.