Factsheet for TraesCS4B01G016300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G014700.1	Wheat	cytosol	96.49	96.77
TraesCS4A01G297400.1	Wheat	cytosol	93.27	95.22
Os03t0659800-01	Rice	plastid	35.96	93.89
EER91123	Sorghum	cytosol	81.29	80.35
Zm00001d033465_P001	Maize	cytosol	78.66	78.66
Zm00001d013624_P001	Maize	cytosol	75.73	75.51
CDY66795	Canola	cytosol	42.11	59.5
Zm00001d043760_P001	Maize	cytosol	18.13	57.41
KRH13038	Soybean	nucleus	55.56	56.05
KRH44865	Soybean	nucleus	55.56	56.05
GSMUA_Achr9P26210_001	Banana	cytosol	55.85	55.69
VIT_19s0027g01640.t01	Wine grape	nucleus	55.26	55.26
Solyc10g005580.2.1	Tomato	nucleus	54.97	54.81
CDY40055	Canola	cytosol	52.63	54.38
Bra026043.1-P	Field mustard	cytosol	52.63	54.38
AT1G16520.1	Thale cress	cytosol	51.46	54.15
PGSC0003DMT400029232	Potato	nucleus	53.8	53.64
PGSC0003DMT400056890	Potato	nucleus	52.92	52.92
AT1G56080.1	Thale cress	nucleus	46.2	50.97
Solyc07g066520.2.1	Tomato	nucleus	52.92	50.14
TraesCS2B01G437900.2	Wheat	cytosol	48.83	50.0
TraesCS3B01G338000.1	Wheat	nucleus	54.09	49.33
CDY63493	Canola	nucleus	43.86	49.02
Bra040781.1-P	Field mustard	nucleus	43.86	49.02
CDY54262	Canola	nucleus	43.57	48.85
Zm00001d019442_P001	Maize	cytosol	21.34	45.34
TraesCS1B01G263900.1	Wheat	cytosol	38.6	39.29
Zm00001d003628_P001	Maize	plastid	18.13	32.98
Zm00001d038230_P001	Maize	cytosol	21.93	31.25

Protein Annotations

EnsemblPlants:TraesCS4B01G016300.1	EnsemblPlantsGene:TraesCS4B01G016300	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:WAT1-related	ncoils:Coil
PANTHER:PTHR31218	PANTHER:PTHR31218:SF76	SEG:seg	MapMan:13.7.2.4	:	:

Description

No Description!

Coordinates

chr4B:-:11906023..11908859

Molecular Weight (calculated)

37337.9 Da

IEP (calculated)

9.810

GRAVY (calculated)

-0.680

Length

342 amino acids

Sequence
(BLAST)

001: MPPAEGAAAG LGVSEFALPD GVLAVLPRDP YEQLDLARRI TALAVAGRVT GLEREAARLR EGAAERDREN AELRDRVALL DRALQETNAR LRAALEDNIQ
101: LSKERDSLAQ TSKKQARDLH KLESFKRHLM QSLRDDSTSP QETVDITTCD QSVSSKTSSC GDGSISHTAA NLLNGSGDLG STTREAARTP VQKYALSPHI
201: NQRLTPEATP NIMSTSASPR GMSTTATPKL VSGATSPSRT RIEGHMSMTP WYSSKQSSAA NSPPRGRPNP GRTPRIDGKE FFRQARSRLS YEQFGAFLAN
301: IKELNAHKQS REETLKKAEE IFGPDSKDLY LSFQGLLNRS LP

Best Arabidopsis Sequence Match ( AT1G16520.1 )
(BLAST)

001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR

Arabidopsis Description

At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.