Factsheet for TraesCS3D01G303400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G298500.1	Wheat	nucleus	91.44	91.69
TraesCS3B01G338000.1	Wheat	nucleus	89.04	88.8
HORVU3Hr1G074720.1	Barley	cytosol	76.47	88.27
OQU87614	Sorghum	cytosol	68.18	73.07
Os01t0768300-00	Rice	cytosol	67.11	72.33
Zm00001d043333_P001	Maize	mitochondrion	58.56	61.69
TraesCS4D01G014700.1	Wheat	cytosol	48.93	53.67
AT1G56080.1	Thale cress	nucleus	43.85	52.9
KRH13038	Soybean	nucleus	45.72	50.44
GSMUA_Achr9P26210_001	Banana	cytosol	46.26	50.44
KRH44865	Soybean	nucleus	45.45	50.15
VIT_19s0027g01640.t01	Wine grape	nucleus	45.72	50.0
Solyc10g005580.2.1	Tomato	nucleus	45.19	49.27
CDY54262	Canola	nucleus	40.11	49.18
CDY66795	Canola	cytosol	31.82	49.17
AT1G16520.1	Thale cress	cytosol	42.51	48.92
PGSC0003DMT400029232	Potato	nucleus	44.65	48.69
Bra040781.1-P	Field mustard	nucleus	39.57	48.37
CDY63493	Canola	nucleus	39.57	48.37
PGSC0003DMT400056890	Potato	nucleus	43.85	47.95
TraesCS2D01G416200.1	Wheat	cytosol	41.71	47.13
CDY40055	Canola	cytosol	41.44	46.83
Bra026043.1-P	Field mustard	cytosol	41.18	46.53
Solyc07g066520.2.1	Tomato	nucleus	43.58	45.15
TraesCS1D01G253800.1	Wheat	cytosol	36.63	40.77

Protein Annotations

EnsemblPlants:TraesCS3D01G303400.1	EnsemblPlantsGene:TraesCS3D01G303400	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:WAT1-related	ncoils:Coil
PANTHER:PTHR31218	PANTHER:PTHR31218:SF76	SEG:seg	MapMan:13.7.2.4	:	:

Description

No Description!

Coordinates

chr3D:-:418236284..418238438

Molecular Weight (calculated)

40305.1 Da

IEP (calculated)

9.820

GRAVY (calculated)

-0.573

Length

374 amino acids

Sequence
(BLAST)

001: MTQTPSAHAA AAPATAPPAE GAGLSEAIVA ALPPDPYDQL EVARKITAVA VAARASRLEH EAARLRQKLA DKDRLAAELA DRAEELDQAL RDADARLRAV
101: LDDNAKLVKE RDSLVQTSRK LARDLAKLET FKRHLMQSLG DDNSSSQETV DIRTCEQSVA KASSWRDDAS VSNNPAPAST TRADGSSEAE SVNQEVGRPF
201: EQKLTITHMT PRLIADPAPK QRSSSAASAR RYSTAVSPKL TSRASSPRRY STAVSPKLSS GSSGACAATS PRLEGHMAMS AWLPSSKMSS AANSPPRGHS
301: VSGRTTRIDG KEFFRQARSR LSYEQFAAFL ANIKELNAHR QSQEETLEKA DQIFGAENKD LLLSFQGLLS RSLT

Best Arabidopsis Sequence Match ( AT1G56080.1 )
(BLAST)

001: MSQSGGDFNL SDEILAVIPT DPYDQLDLAR KITSMAIASR VSNLESQVSG LRQKLLEKDR LVHELEDRVS SFERLYHEAD SSLKNVVDEN MKLTQERDSL
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR

Arabidopsis Description

At1g56080 [Source:UniProtKB/TrEMBL;Acc:Q0IGM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.