Factsheet for TraesCS3A01G298500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G338000.1	Wheat	nucleus	92.23	91.73
TraesCS3D01G303400.1	Wheat	nucleus	91.69	91.44
HORVU3Hr1G074720.1	Barley	cytosol	76.41	87.96
Os01t0768300-00	Rice	cytosol	68.36	73.49
OQU87614	Sorghum	cytosol	68.1	72.78
Zm00001d043333_P001	Maize	mitochondrion	59.25	62.25
AT1G56080.1	Thale cress	nucleus	43.16	51.94
TraesCS4A01G297400.1	Wheat	cytosol	46.11	51.34
GSMUA_Achr9P26210_001	Banana	cytosol	46.38	50.44
VIT_19s0027g01640.t01	Wine grape	nucleus	45.84	50.0
KRH13038	Soybean	nucleus	45.31	49.85
KRH44865	Soybean	nucleus	45.04	49.56
CDY66795	Canola	cytosol	31.9	49.17
AT1G16520.1	Thale cress	cytosol	42.63	48.92
Solyc10g005580.2.1	Tomato	nucleus	44.5	48.4
CDY54262	Canola	nucleus	39.41	48.2
PGSC0003DMT400029232	Potato	nucleus	44.24	48.1
Bra040781.1-P	Field mustard	nucleus	38.87	47.39
CDY63493	Canola	nucleus	38.87	47.39
CDY40055	Canola	cytosol	41.55	46.83
Bra026043.1-P	Field mustard	cytosol	41.29	46.53
PGSC0003DMT400056890	Potato	nucleus	42.63	46.49
TraesCS2A01G419200.1	Wheat	cytosol	41.02	46.22
Solyc07g066520.2.1	Tomato	nucleus	42.36	43.77
TraesCS1A01G254400.1	Wheat	cytosol	36.19	40.18

Protein Annotations

EnsemblPlants:TraesCS3A01G298500.1	EnsemblPlantsGene:TraesCS3A01G298500	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:WAT1-related	ncoils:Coil
PANTHER:PTHR31218	PANTHER:PTHR31218:SF76	SEG:seg	MapMan:13.7.2.4	:	:

Description

No Description!

Coordinates

chr3A:+:532844195..532846163

Molecular Weight (calculated)

40250.0 Da

IEP (calculated)

9.964

GRAVY (calculated)

-0.603

Length

373 amino acids

Sequence
(BLAST)

001: MTHTPSAHAA TPAPQPPAEG AGLSEAIVAA LPPDPYDQLE VARKITAVAV AARASRLEHE AARLRQKLAD KDRLAAELAD RAEELDQALR DADARLRAVL
101: DDNAKLVKER DSLVQTSRKL ARDLAKLETF KRHLMQTLGD DNSSSQETVD IRTCEQSVAK ASSWRDDASA SNNPAPASTT RADGSSEAES VNQEVARPFE
201: QKLTITHMTP RLIADPAPKQ RSSSAASARR YSTAVSPKLA SRASSPRRYS TAVSPKLSSG SSGAGAATSP RLEGHMAMSA WLPSSKMSSA ANSPPRGHSV
301: SGRTTRIDGK EFFRQARSRL SYEQFAAFLA NIKELNAHRQ SQEETLEKAD QIFGAENKDL LLSFQGLLSR SLT

Best Arabidopsis Sequence Match ( AT1G16520.1 )
(BLAST)

001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR

Arabidopsis Description

At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.