Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G258700.1 | Wheat | plastid | 94.26 | 93.98 |
| HORVU7Hr1G085160.2 | Barley | plastid, vacuole | 89.73 | 91.38 |
| TraesCS7A01G369800.1 | Wheat | cytosol, mitochondrion, nucleus | 93.35 | 85.83 |
| Os03t0587100-04 | Rice | plastid | 71.9 | 71.04 |
| EER93868 | Sorghum | cytosol | 64.05 | 64.44 |
| Zm00001d033111_P003 | Maize | cytosol | 58.61 | 61.78 |
| PGSC0003DMT400057413 | Potato | plastid | 54.98 | 59.28 |
| Solyc07g065180.2.1 | Tomato | cytosol, plastid | 53.78 | 58.94 |
| KRH46290 | Soybean | cytosol | 53.78 | 58.36 |
| GSMUA_Achr4P33110_001 | Banana | mitochondrion | 54.38 | 56.43 |
| VIT_19s0090g01580.t01 | Wine grape | plastid | 52.57 | 56.13 |
| AT1G50575.1 | Thale cress | plastid | 50.45 | 54.58 |
| KRG98613 | Soybean | plastid | 41.99 | 52.85 |
| CDY37126 | Canola | plastid | 47.43 | 52.33 |
| Bra018858.1-P | Field mustard | plastid | 47.13 | 52.0 |
| CDY22805 | Canola | plastid | 46.83 | 51.67 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G353500.1 | EnsemblPlantsGene:TraesCS7D01G353500 | Gene3D:3.40.50.450 | InterPro:LOG_fam | PANTHER:PTHR31208 | PANTHER:PTHR31208:SF1 |
| PFAM:PF03641 | SEG:seg | SUPFAM:SSF102405 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7D:+:457140621..457141702
Molecular Weight (calculated)
36038.9 Da
IEP (calculated)
7.929
GRAVY (calculated)
-0.230
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAMASSVV GSRAEFGSRL GLARPWLRPT GGRGGPHTPL SFRHLPWPTS RLVRSRAART RGVVAAANPH QQQVGVEGIA AMEPERGSPG EVREEIARCY
101: ELVRRLGRGA VYLGSSRVPA AHPHYHQTAQ LAAEIAKLLD CTTWTGAGPG LMDAAIQGAL EAGKPIGGFK IGKEAGEWTA SNFHPYLPSE TYLTCRFFSA
201: RKHGLVDAVV RNNSTDRTAI VALPGGIGTL DELFEIMALI QLERIGSALP VPFLLMNYDS YYSKLLEFLN DCEDWGTVSP GEVASLWKIC SGNHEALEYL
301: AQFYDVPTGE RNYGISSPSK EDRVPSYTVR R
101: ELVRRLGRGA VYLGSSRVPA AHPHYHQTAQ LAAEIAKLLD CTTWTGAGPG LMDAAIQGAL EAGKPIGGFK IGKEAGEWTA SNFHPYLPSE TYLTCRFFSA
201: RKHGLVDAVV RNNSTDRTAI VALPGGIGTL DELFEIMALI QLERIGSALP VPFLLMNYDS YYSKLLEFLN DCEDWGTVSP GEVASLWKIC SGNHEALEYL
301: AQFYDVPTGE RNYGISSPSK EDRVPSYTVR R
001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
Arabidopsis Description
Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.