Factsheet for HORVU7Hr1G085160.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

vacuole: 16581873

msms PMID: 16581873 doi

A Endler, S Meyer, S Schelbert, T Schneider, W Weschke, SW Peters, F Keller, S Baginsky, E Martinoia, UG Schmidt

University of Zurich, Institute of Plant Biology, CH-8008 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G077710.3
HORVU6Hr1G094240.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50575.1	HORVU6Hr1G094240.3	AT3G19895.1	21798944
AT1G50575.1	HORVU6Hr1G077710.3	AT4G25200.1	21798944
AT1G50575.1	HORVU7Hr1G036470.3	AT4G25200.1	21798944
AT1G50575.1	HORVU7Hr1G036500.7	AT4G25200.1	21798944
AT1G50575.1	HORVU7Hr1G036540.3	AT4G25200.1	21798944
AT1G50575.1	HORVU7Hr1G036570.2	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G353500.1	Wheat	plastid	91.38	89.73
TraesCS7B01G258700.1	Wheat	plastid	90.15	88.25
TraesCS7A01G369800.1	Wheat	cytosol, mitochondrion, nucleus	89.85	81.11
Os03t0587100-04	Rice	plastid	71.38	69.25
EER93868	Sorghum	cytosol	65.85	65.05
Zm00001d033111_P003	Maize	cytosol	60.92	63.06
PGSC0003DMT400057413	Potato	plastid	54.46	57.65
Solyc07g065180.2.1	Tomato	cytosol, plastid	53.54	57.62
KRH46290	Soybean	cytosol	53.23	56.72
GSMUA_Achr4P33110_001	Banana	mitochondrion	55.38	56.43
VIT_19s0090g01580.t01	Wine grape	plastid	52.62	55.16
AT1G50575.1	Thale cress	plastid	51.08	54.25
Bra018858.1-P	Field mustard	plastid	48.31	52.33
CDY22805	Canola	plastid	48.31	52.33
CDY37126	Canola	plastid	48.31	52.33
KRG98613	Soybean	plastid	41.23	50.95

Protein Annotations

EnsemblPlants:HORVU7Hr1G085160.2	EnsemblPlantsGene:HORVU7Hr1G085160	Gene3D:3.40.50.450	InterPro:LOG_fam	PANTHER:PTHR31208	PANTHER:PTHR31208:SF1
PFAM:PF03641	SUPFAM:SSF102405	UniParc:UPI000296D582	UniProt:M0V339	MapMan:35.2	:

Description

No Description!

Coordinates

chrchr7H:-:514716798..514718257

Molecular Weight (calculated)

35675.5 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.253

Length

325 amino acids

Sequence
(BLAST)

001: MEAATANSVV GSSAEFARPW LRPSGGRARP HTPLSFRQLP WPTSRLVRSR ADRTRGVVAA ANPHQQQVGL EGGDAMDPER GSPGEVREEI ARCYELVRRL
101: GRGAVYLGSS RVPAAHPHYH QTAQLAAEIA KLLDCTTWTG AGPGLMDAAI QGALEADKPV GGFKIGKEAG EWTTSNFHPY LPPETYLTCR FFSARKHGLV
201: DAVVRNSLAD RTAIVALPGG IGTLDELFEI MALIQLERIG SALPVPFLLM NYDSYYSKLL EFLNDCEDWG TVAPGEVASL WKICNGNHEA LEYLAQFYDV
301: PTGERNYDIS PLLKKHRVPS YTVMR

Best Arabidopsis Sequence Match ( AT1G50575.1 )
(BLAST)

001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG

Arabidopsis Description

Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.