CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368
CDY33428
CDY42216

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50575.1	CDY33428	AT3G19895.1	21798944
AT1G50575.1	CDY42216	AT3G19895.1	21798944
AT1G50575.1	CDX89437	AT4G25200.1	21798944
AT1G50575.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22805	Canola	plastid	95.33	95.33
Bra018858.1-P	Field mustard	plastid	94.67	94.67
AT1G50575.1	Thale cress	plastid	78.33	76.8
Solyc07g065180.2.1	Tomato	cytosol, plastid	56.33	55.96
VIT_19s0090g01580.t01	Wine grape	plastid	56.67	54.84
KRH46290	Soybean	cytosol	55.67	54.75
PGSC0003DMT400057413	Potato	plastid	54.67	53.42
GSMUA_Achr4P33110_001	Banana	mitochondrion	54.67	51.41
Zm00001d033111_P003	Maize	cytosol	51.33	49.04
KRG98613	Soybean	plastid	42.67	48.67
HORVU7Hr1G085160.2	Barley	plastid, vacuole	52.33	48.31
TraesCS7B01G258700.1	Wheat	plastid	53.0	47.89
EER93868	Sorghum	cytosol	52.33	47.72
Os03t0587100-04	Rice	plastid	53.0	47.46
TraesCS7D01G353500.1	Wheat	plastid	52.33	47.43
TraesCS7A01G369800.1	Wheat	cytosol, mitochondrion, nucleus	51.67	43.06

Protein Annotations

EnsemblPlants:CDY37126	EnsemblPlantsGene:GSBRNA2T00063357001	Gene3D:3.40.50.450	InterPro:LOG_fam	PANTHER:PTHR31208	PANTHER:PTHR31208:SF1
PFAM:PF03641	ProteinID:CDY37126	ProteinID:CDY37126.1	SEG:seg	SUPFAM:SSF102405	UniParc:UPI0004EEFD30
UniProt:A0A078HHF0	MapMan:35.2	:	:	:	:

Description

BnaC06g03730DBnaC06g03730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHF0]

Coordinates

chrLK032392:+:181943..184507

Molecular Weight (calculated)

33250.8 Da

IEP (calculated)

7.439

GRAVY (calculated)

-0.210

Length

300 amino acids

Sequence
(BLAST)

001: MEVSMLGSSR SFLLSSKTHT PKPTSSLTER GQSCLKMRVG NPIRTYSVRS LKCSSVSEDL FERSSPLEVK KELETCFDLI HRLGRGILYL GSARIQANHS
101: HYLQSQELSR EAANLLNCTT WSGAGPGLMD AVTKGALEAE KPIGGIKIEK EAGEWTASKV HPYLPPQNYH TCRFFSARKH GLVDAVVRNN VSDKTAVIAL
201: PGGIGTLDEM FEILALVQLK RIGSVLPVPF IVMNYDSFYS KLFEFIESCE DLGTVYKGEV SALWKVCNRN SEALTYLAEF YELPYGSTKS ESELRETTCG

Best Arabidopsis Sequence Match ( AT1G50575.1 )
(BLAST)

001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG

Arabidopsis Description

Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.