Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G258700.1 | Wheat | plastid | 86.67 | 93.98 |
| TraesCS7D01G353500.1 | Wheat | plastid | 85.83 | 93.35 |
| HORVU7Hr1G085160.2 | Barley | plastid, vacuole | 81.11 | 89.85 |
| Os03t0587100-04 | Rice | plastid | 65.83 | 70.75 |
| EER93868 | Sorghum | cytosol | 58.06 | 63.53 |
| Zm00001d033111_P003 | Maize | cytosol | 54.17 | 62.1 |
| PGSC0003DMT400057413 | Potato | plastid | 50.28 | 58.96 |
| Solyc07g065180.2.1 | Tomato | cytosol, plastid | 49.44 | 58.94 |
| KRH46290 | Soybean | cytosol | 49.17 | 58.03 |
| GSMUA_Achr4P33110_001 | Banana | mitochondrion | 50.28 | 56.74 |
| VIT_19s0090g01580.t01 | Wine grape | plastid | 47.22 | 54.84 |
| AT1G50575.1 | Thale cress | plastid | 45.83 | 53.92 |
| KRG98613 | Soybean | plastid | 38.33 | 52.47 |
| Bra018858.1-P | Field mustard | plastid | 43.33 | 52.0 |
| CDY22805 | Canola | plastid | 43.06 | 51.67 |
| CDY37126 | Canola | plastid | 43.06 | 51.67 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G369800.1 | EnsemblPlantsGene:TraesCS7A01G369800 | Gene3D:3.40.50.450 | InterPro:LOG_fam | PANTHER:PTHR31208 | PANTHER:PTHR31208:SF1 |
| PFAM:PF03641 | SEG:seg | SUPFAM:SSF102405 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7A:-:543360514..543361682
Molecular Weight (calculated)
39166.6 Da
IEP (calculated)
8.814
GRAVY (calculated)
-0.336
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSRDAQFSK GKRKENTERA PRCCSGESME AATASSVVGS RAEFGSRLGL ARPWLRPSGG RGGPHTPLPF RHLPWPTSRL VRSRAVRARS VVAAANPHQQ
101: QAGVGGGEAM EPERGSPHEV REEIARCYEL VRRLGRGAVY LGSSRVPAAH PHYRQTAQLA AEIAKLLDCT TWTGAGPGLM DAATQGALEA GKPVGGFRIG
201: KEAGEWTASN FHPYLPSETY LTCRFFSARK HGLVDAVVRN SSADKTAIVA LPGGIGTLDE LFEIMALIQL ERIGSALPVP LLLMNYDSYY SKLLEFLNDC
301: EDWGTVAPGE VASLWKICSG NHEALEYLAQ FYDVPTGERN YGISSPPSKV DRVPFYTVRR
101: QAGVGGGEAM EPERGSPHEV REEIARCYEL VRRLGRGAVY LGSSRVPAAH PHYRQTAQLA AEIAKLLDCT TWTGAGPGLM DAATQGALEA GKPVGGFRIG
201: KEAGEWTASN FHPYLPSETY LTCRFFSARK HGLVDAVVRN SSADKTAIVA LPGGIGTLDE LFEIMALIQL ERIGSALPVP LLLMNYDSYY SKLLEFLNDC
301: EDWGTVAPGE VASLWKICSG NHEALEYLAQ FYDVPTGERN YGISSPPSKV DRVPFYTVRR
001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
Arabidopsis Description
Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.