Factsheet for PGSC0003DMT400057413

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400082437

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50575.1	PGSC0003DMT400082437	AT3G19895.1	21798944
AT1G50575.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065180.2.1	Tomato	cytosol, plastid	93.16	94.7
KRH46290	Soybean	cytosol	62.22	62.62
VIT_19s0090g01580.t01	Wine grape	plastid	62.54	61.94
Bra018858.1-P	Field mustard	plastid	54.4	55.67
AT1G50575.1	Thale cress	plastid	55.37	55.56
CDY22805	Canola	plastid	54.07	55.33
TraesCS7D01G353500.1	Wheat	plastid	59.28	54.98
CDY37126	Canola	plastid	53.42	54.67
HORVU7Hr1G085160.2	Barley	plastid, vacuole	57.65	54.46
GSMUA_Achr4P33110_001	Banana	mitochondrion	56.35	54.23
TraesCS7B01G258700.1	Wheat	plastid	58.63	54.22
Zm00001d033111_P003	Maize	cytosol	53.42	52.23
KRG98613	Soybean	plastid	44.63	52.09
Os03t0587100-04	Rice	plastid	56.35	51.64
TraesCS7A01G369800.1	Wheat	cytosol, mitochondrion, nucleus	58.96	50.28
EER93868	Sorghum	cytosol	53.09	49.54

Protein Annotations

EnsemblPlants:PGSC0003DMT400057413	EnsemblPlantsGene:PGSC0003DMG400022292	EntrezGene:102593661	Gene3D:3.40.50.450	InterPro:LOG_fam	PANTHER:PTHR31208
PANTHER:PTHR31208:SF1	PFAM:PF03641	PGSC:PGSC0003DMG400022292	RefSeq:XP_006346167.1	SUPFAM:SSF102405	UniParc:UPI0002956A84
UniProt:M1C0Z8	MapMan:35.2	:	:	:	:

Description

Lysine decarbxylase [Source:PGSC_GENE;Acc:PGSC0003DMG400022292]

Coordinates

chr7:+:55280655..55284557

Molecular Weight (calculated)

34321.0 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.225

Length

307 amino acids

Sequence
(BLAST)

001: MGFAAVSTIS MANVFLRSSY HYQKDVNLGS CMRKETWGFN LYLPKLKYQS RISFCCKNES IDFEERTSPN EVKKEIEQCY ELIHRLGRGV VYLGSSRMGS
101: GHPHYIKTFE LGNKIATLLD CTTWSGAGPG LMDAATQGAL QAGKPVGGFK IGKEAGEWTA TNFHPYLPSE SYLTCRFFSA RKHGLVDAVV RCRSSERTAV
201: VALPGGIGTL DEVFEIMALI QLERIGSQLP VPLLLMNYDS FYTNLLEFLN DCEKWGTVSK GEVESLWKIC NNNSVALDYL AEFYGLSTIE TNRKDSESSE
301: HLRINHG

Best Arabidopsis Sequence Match ( AT1G50575.1 )
(BLAST)

001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG

Arabidopsis Description

Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.