Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G353500.1 | Wheat | plastid | 93.98 | 94.26 |
| HORVU7Hr1G085160.2 | Barley | plastid, vacuole | 88.25 | 90.15 |
| TraesCS7A01G369800.1 | Wheat | cytosol, mitochondrion, nucleus | 93.98 | 86.67 |
| Os03t0587100-04 | Rice | plastid | 70.18 | 69.55 |
| EER93868 | Sorghum | cytosol | 62.95 | 63.53 |
| Zm00001d033111_P003 | Maize | cytosol | 58.43 | 61.78 |
| PGSC0003DMT400057413 | Potato | plastid | 54.22 | 58.63 |
| Solyc07g065180.2.1 | Tomato | cytosol, plastid | 53.01 | 58.28 |
| KRH46290 | Soybean | cytosol | 53.31 | 58.03 |
| GSMUA_Achr4P33110_001 | Banana | mitochondrion | 54.52 | 56.74 |
| VIT_19s0090g01580.t01 | Wine grape | plastid | 51.2 | 54.84 |
| AT1G50575.1 | Thale cress | plastid | 50.0 | 54.25 |
| Bra018858.1-P | Field mustard | plastid | 47.89 | 53.0 |
| CDY37126 | Canola | plastid | 47.89 | 53.0 |
| KRG98613 | Soybean | plastid | 41.87 | 52.85 |
| CDY22805 | Canola | plastid | 47.59 | 52.67 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G258700.1 | EnsemblPlantsGene:TraesCS7B01G258700 | Gene3D:3.40.50.450 | InterPro:LOG_fam | PANTHER:PTHR31208 | PANTHER:PTHR31208:SF1 |
| PFAM:PF03641 | SUPFAM:SSF102405 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:479196845..479197932
Molecular Weight (calculated)
35806.6 Da
IEP (calculated)
8.212
GRAVY (calculated)
-0.210
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAATASSVV GSRAEFGSRP GLARPWLRPI GGGGGPHTPL SFRHLPWPTS RLVRSRAART WSVVAAANPH QQQVGVKGGE AMEPERGSPS EVKEEIARCY
101: ELVRRLGRGA VYLGSSRVPA AHPHYHQTAQ LAAEIAKLLG CTTWTGAGPG LMDAAIQGAL EAGKPVGGFK IGKEAGEWTA SNFHPYLPSE TYLTCRFFSA
201: RKHGLVDAVV RNSSADKTAI VALPGGIGTL DELFEIMALV QLERIGSALP VPFLLMNYDS YYSKLLEFLN DCEDWGTVAP GEVASLWKIC SGNHEALEYL
301: AQFYDVPTGE RNYGISSPPS KEDRVPSYTV RR
101: ELVRRLGRGA VYLGSSRVPA AHPHYHQTAQ LAAEIAKLLG CTTWTGAGPG LMDAAIQGAL EAGKPVGGFK IGKEAGEWTA SNFHPYLPSE TYLTCRFFSA
201: RKHGLVDAVV RNSSADKTAI VALPGGIGTL DELFEIMALV QLERIGSALP VPFLLMNYDS YYSKLLEFLN DCEDWGTVAP GEVASLWKIC SGNHEALEYL
301: AQFYDVPTGE RNYGISSPPS KEDRVPSYTV RR
001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
Arabidopsis Description
Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.