Factsheet for Os03t0587100-04

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0758000-01
Os02t0829600-01
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50575.1	Os02t0829600-01	AT3G19895.1	21798944
AT1G50575.1	Os02t0758000-01	AT4G25200.1	21798944
AT1G50575.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G353500.1	Wheat	plastid	71.04	71.9
HORVU7Hr1G085160.2	Barley	plastid, vacuole	69.25	71.38
TraesCS7B01G258700.1	Wheat	plastid	69.55	70.18
EER93868	Sorghum	cytosol	67.46	68.69
TraesCS7A01G369800.1	Wheat	cytosol, mitochondrion, nucleus	70.75	65.83
Zm00001d033111_P003	Maize	cytosol	59.7	63.69
AT1G50575.1	Thale cress	plastid	52.84	57.84
VIT_19s0090g01580.t01	Wine grape	plastid	53.43	57.74
Solyc07g065180.2.1	Tomato	cytosol, plastid	51.94	57.62
PGSC0003DMT400057413	Potato	plastid	51.64	56.35
KRH46290	Soybean	cytosol	50.15	55.08
GSMUA_Achr4P33110_001	Banana	mitochondrion	52.24	54.86
Bra018858.1-P	Field mustard	plastid	48.36	54.0
CDY22805	Canola	plastid	48.36	54.0
CDY37126	Canola	plastid	47.46	53.0
KRG98613	Soybean	plastid	39.4	50.19

Protein Annotations

EMBL:AK102947	EnsemblPlants:Os03t0587100-04	EnsemblPlantsGene:Os03g0587100	EntrezGene:4333348	Gene3D:3.40.50.450	InterPro:LOG_fam
ncoils:Coil	PANTHER:PTHR31208	PANTHER:PTHR31208:SF1	PFAM:PF03641	ProteinID:AAT76324.1	ProteinID:ABF97361.1
ProteinID:BAS85103.1	RefSeq:XP_015631782.1	RefSeq:XP_015631783.1	RefSeq:XP_015631785.1	SEG:seg	SUPFAM:SSF102405
UniParc:UPI00003E1FF0	UniProt:Q6F2U6	MapMan:35.2	:	:	:

Description

Similar to decarboxylase family protein. (Os03t0587100-01);Similar to decarboxylase family protein. (Os03t0587100-02);Similar to decarboxylase family protein. (Os03t0587100-03);Expressed protein. (Os03t0587100-04)

Coordinates

chr3:+:21685498..21687238

Molecular Weight (calculated)

36117.8 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.190

Length

335 amino acids

Sequence
(BLAST)

001: MAAAAPSSVV AGLVSGLGLA RSSLTPSDGR SPSLSPLHPP WPAAPRLVCR SSGARPPRER AVAAAAAAAN SPRQQQQLGE HEHEEAVAAA AMEPERSSPH
101: EVREEIARCF DLVRRLGRGA VYLGSSRVPP THPHYLHAAE LSREIARLLD CTTWSGAGPG FMDAATQGAL EAGKPVGGFK IGKEAGEWTT SNFHPYLPSE
201: SYLTCRFFSA RKHGLVDAAV RNCPTDRTAI IALPGGIGTL DELFEMMALI QLERIGSTLP VPFLLLNYDS YYSKLLDFLN DCEEWGTVAP GEVASLWKVC
301: NGNHEALEYL AQFYNVPLAE RNYCISPQLK QQATS

Best Arabidopsis Sequence Match ( AT1G50575.1 )
(BLAST)

001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG

Arabidopsis Description

Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.