Factsheet for VIT_19s0090g01580.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g01230.t01
VIT_16s0022g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50575.1	VIT_01s0010g01230.t01	AT3G19895.1	21798944
AT1G50575.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065180.2.1	Tomato	cytosol, plastid	61.61	63.24
PGSC0003DMT400057413	Potato	plastid	61.94	62.54
KRH46290	Soybean	cytosol	60.65	61.64
Bra018858.1-P	Field mustard	plastid	55.81	57.67
CDY22805	Canola	plastid	55.81	57.67
CDY37126	Canola	plastid	54.84	56.67
AT1G50575.1	Thale cress	plastid	55.81	56.54
GSMUA_Achr4P33110_001	Banana	mitochondrion	58.06	56.43
KRG98613	Soybean	plastid	46.77	55.13
Os03t0587100-04	Rice	plastid	57.74	53.43
HORVU7Hr1G085160.2	Barley	plastid, vacuole	55.16	52.62
TraesCS7D01G353500.1	Wheat	plastid	56.13	52.57
EER93868	Sorghum	cytosol	55.16	51.98
Zm00001d033111_P003	Maize	cytosol	52.26	51.59
TraesCS7B01G258700.1	Wheat	plastid	54.84	51.2
TraesCS7A01G369800.1	Wheat	cytosol, mitochondrion, nucleus	54.84	47.22

Protein Annotations

ArrayExpress:VIT_19s0090g01580	EMBL:FN595751	EnsemblPlants:VIT_19s0090g01580.t01	EnsemblPlantsGene:VIT_19s0090g01580	EntrezGene:100243479	EntrezGene:LOC100243479
Gene3D:3.40.50.450	InterPro:LOG_fam	PANTHER:PTHR31208	PANTHER:PTHR31208:SF1	PFAM:PF03641	ProteinID:CBI26726
ProteinID:CBI26726.3	RefSeq:XP_002276560	RefSeq:XP_002276560.1	SUPFAM:SSF102405	TIGR:TC66827	unigene:Vvi.15038
UniParc:UPI00019855FF	UniProt:D7T867	wikigene:100243479	wikigene:LOC100243479	MapMan:35.2	:

Description

No Description!

Coordinates

chr19:+:7666737..7669349

Molecular Weight (calculated)

34096.7 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.152

Length

310 amino acids

Sequence
(BLAST)

001: MAASLGSHTL LRNSHQRTVR FAPFSGGERR QTLSFKFSEL KPHNPWRILV CKGEFVEFEE RTSPNEVRKE IEQCYELINK LGRGVVYLGS SRMGPDHSHY
101: LQALELGREV ANLLDCTSWT GAGPGLMDAA SKGALQAGKP VGGFKIGREA GQQTALSFHP YLPSETYFTC RFFSARKHGL VDAAVRSCNC DRTAVVALPG
201: GIGTLDEVFE ILALIQLQRI GSELPVPFLL MNYDSFYSKL LDFLSDSECW GTVCKGEVES LWKVCNNNSE ALSYLAEFYD LPLGDNGKCE TGLATASGPI
301: SYLIGKFVGN

Best Arabidopsis Sequence Match ( AT1G50575.1 )
(BLAST)

001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG

Arabidopsis Description

Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.