CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23958
KRH24219
KRH29221
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50575.1	KRH24219	AT3G19895.1	21798944
AT1G50575.1	KRH29221	AT3G19895.1	21798944
AT1G50575.1	KRH23958	AT4G25200.1	21798944
AT1G50575.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98613	Soybean	plastid	57.7	66.92
Solyc07g065180.2.1	Tomato	cytosol, plastid	62.3	62.91
PGSC0003DMT400057413	Potato	plastid	62.62	62.22
VIT_19s0090g01580.t01	Wine grape	plastid	61.64	60.65
Bra018858.1-P	Field mustard	plastid	55.74	56.67
CDY22805	Canola	plastid	55.08	56.0
AT1G50575.1	Thale cress	plastid	56.07	55.88
CDY37126	Canola	plastid	54.75	55.67
GSMUA_Achr4P33110_001	Banana	mitochondrion	56.72	54.23
TraesCS7D01G353500.1	Wheat	plastid	58.36	53.78
TraesCS7B01G258700.1	Wheat	plastid	58.03	53.31
HORVU7Hr1G085160.2	Barley	plastid, vacuole	56.72	53.23
Zm00001d033111_P003	Maize	cytosol	53.77	52.23
Os03t0587100-04	Rice	plastid	55.08	50.15
TraesCS7A01G369800.1	Wheat	cytosol, mitochondrion, nucleus	58.03	49.17
EER93868	Sorghum	cytosol	52.79	48.94

Protein Annotations

EMBL:ACUP02005337	EnsemblPlants:KRH46290	EnsemblPlantsGene:GLYMA_08G325100	EntrezGene:100803538	Gene3D:3.40.50.450	InterPro:LOG_fam
PANTHER:PTHR31208	PANTHER:PTHR31208:SF1	PFAM:PF03641	ProteinID:KRH46290	ProteinID:KRH46290.1	SUPFAM:SSF102405
UniParc:UPI0002338CBD	UniProt:I1KYF9	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:44306500..44309751

Molecular Weight (calculated)

33953.3 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.227

Length

305 amino acids

Sequence
(BLAST)

001: MGFSVAASLG TYVVLRDTHE TRIKCQFLCR KEQNSRIGFK FSKHKAIQSA IFFSKHEFTD LDERKSSDEV KEEIKKCYEL INRLGRGVVY LGSSRMGPSH
101: SHYVQAQELA KEIANLLDCT SWSGAGPGLM DAVTQGSMLA GKPVGGFKIG REAGEWTASN FHPYLPSENY LTFRFFSARK HGLVDAVVRN NSFDKTAVVA
201: LPGGIGTLDE VFEILALIQL ERIGSKFPVP FLLMNYDSFY SKLLEFLNDC EGWGTVSKGE VASLWKVCNS NSEALAYLEE FYGISSSDKS KNVTKLYSTY
301: ESPSS

Best Arabidopsis Sequence Match ( AT1G50575.1 )
(BLAST)

001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG

Arabidopsis Description

Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.