Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50575.1 | KRH24219 | AT3G19895.1 | 21798944 |
| AT1G50575.1 | KRH29221 | AT3G19895.1 | 21798944 |
| AT1G50575.1 | KRH23958 | AT4G25200.1 | 21798944 |
| AT1G50575.1 | KRH39841 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH46290 | Soybean | cytosol | 66.92 | 57.7 |
| VIT_19s0090g01580.t01 | Wine grape | plastid | 55.13 | 46.77 |
| Solyc07g065180.2.1 | Tomato | cytosol, plastid | 51.71 | 45.03 |
| PGSC0003DMT400057413 | Potato | plastid | 52.09 | 44.63 |
| Bra018858.1-P | Field mustard | plastid | 49.43 | 43.33 |
| AT1G50575.1 | Thale cress | plastid | 50.19 | 43.14 |
| CDY22805 | Canola | plastid | 49.05 | 43.0 |
| CDY37126 | Canola | plastid | 48.67 | 42.67 |
| GSMUA_Achr4P33110_001 | Banana | mitochondrion | 51.33 | 42.32 |
| TraesCS7D01G353500.1 | Wheat | plastid | 52.85 | 41.99 |
| TraesCS7B01G258700.1 | Wheat | plastid | 52.85 | 41.87 |
| HORVU7Hr1G085160.2 | Barley | plastid, vacuole | 50.95 | 41.23 |
| Os03t0587100-04 | Rice | plastid | 50.19 | 39.4 |
| EER93868 | Sorghum | cytosol | 48.67 | 38.91 |
| TraesCS7A01G369800.1 | Wheat | cytosol, mitochondrion, nucleus | 52.47 | 38.33 |
| Zm00001d033111_P003 | Maize | cytosol | 45.25 | 37.9 |
Protein Annotations
| EMBL:ACUP02010905 | EnsemblPlants:KRG98613 | EnsemblPlantsGene:GLYMA_18G084600 | Gene3D:3.40.50.450 | InterPro:LOG_fam | PANTHER:PTHR31208 |
| PANTHER:PTHR31208:SF1 | PFAM:PF03641 | ProteinID:KRG98613 | ProteinID:KRG98613.1 | SUPFAM:SSF102405 | UniParc:UPI0006EDCD4A |
| UniProt:A0A0R0EYI1 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:-:8348528..8351230
Molecular Weight (calculated)
29259.4 Da
IEP (calculated)
8.857
GRAVY (calculated)
-0.062
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASLGTHVV LRGTHETRIR ATFCAEKNRI IELVSSSQST RPFKEQSLLA SKSSLGWMRG RAQMSSSRKA LCRVLSSTLH RALNFYIFKE EIKKCYELIN
101: RVGRGVVYLG SSRMGPSHSH YVQAQDLAKE IENLLDCTTW SGGPGLMDAV TEGAMLAGKP VGGFKIGREA GEWTASNFHP YLSSENYLTC RFFPARKHGL
201: VDAVVRNNSF DKTAVVALPC GIDTLDEVFE ILALIQLEWI GSKLHVPFLL MNYDSFIQSC LNF
101: RVGRGVVYLG SSRMGPSHSH YVQAQDLAKE IENLLDCTTW SGGPGLMDAV TEGAMLAGKP VGGFKIGREA GEWTASNFHP YLSSENYLTC RFFPARKHGL
201: VDAVVRNNSF DKTAVVALPC GIDTLDEVFE ILALIQLEWI GSKLHVPFLL MNYDSFIQSC LNF
001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
Arabidopsis Description
Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.