Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra013872.1-P | |
| Bra038238.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50575.1 | Bra038238.1-P | AT3G19895.1 | 21798944 |
| AT1G50575.1 | Bra013872.1-P | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22805 | Canola | plastid | 95.33 | 95.33 |
| CDY37126 | Canola | plastid | 94.67 | 94.67 |
| AT1G50575.1 | Thale cress | plastid | 78.67 | 77.12 |
| Solyc07g065180.2.1 | Tomato | cytosol, plastid | 57.0 | 56.62 |
| VIT_19s0090g01580.t01 | Wine grape | plastid | 57.67 | 55.81 |
| KRH46290 | Soybean | cytosol | 56.67 | 55.74 |
| PGSC0003DMT400057413 | Potato | plastid | 55.67 | 54.4 |
| GSMUA_Achr4P33110_001 | Banana | mitochondrion | 55.0 | 51.72 |
| Zm00001d033111_P003 | Maize | cytosol | 52.0 | 49.68 |
| KRG98613 | Soybean | plastid | 43.33 | 49.43 |
| Os03t0587100-04 | Rice | plastid | 54.0 | 48.36 |
| EER93868 | Sorghum | cytosol | 53.0 | 48.33 |
| HORVU7Hr1G085160.2 | Barley | plastid, vacuole | 52.33 | 48.31 |
| TraesCS7B01G258700.1 | Wheat | plastid | 53.0 | 47.89 |
| TraesCS7D01G353500.1 | Wheat | plastid | 52.0 | 47.13 |
| TraesCS7A01G369800.1 | Wheat | cytosol, mitochondrion, nucleus | 52.0 | 43.33 |
Protein Annotations
| EnsemblPlants:Bra018858.1 | EnsemblPlants:Bra018858.1-P | EnsemblPlantsGene:Bra018858 | Gene3D:3.40.50.450 | InterPro:LOG_fam | PANTHER:PTHR31208 |
| PANTHER:PTHR31208:SF1 | PFAM:PF03641 | SUPFAM:SSF102405 | UniParc:UPI000253EAE7 | UniProt:M4DQR5 | MapMan:35.2 |
Description
AT1G50575 (E=2e-135) | lysine decarboxylase family protein
Coordinates
chrA06:+:1585170..1586478
Molecular Weight (calculated)
33174.8 Da
IEP (calculated)
7.988
GRAVY (calculated)
-0.260
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSMLGSSR SFRLSPKTQT PKPASSLTER GQSCLKMRGG NPIRTYSARS LKCSSVSEDL FERSSPLEVK KELETCFDLI HRLGRGILYL GSARIQPNHS
101: HYLQSQELSR EAANLLDCTT WSGAGPGLMD AVTKGALEAE KPVGGIKIEK EAGEWTASKV HPYLPPQNYH TCRFFSARKH GLVDAVVRNN VSDKTAVIAL
201: PGGIGTLDEM FEILALVQLK RIGSVLPVPF IVMNYDSFYS KLFEFIESCE DLGTVYKGEV SALWKVCNSN SEALTYLAEF YELPYGCTKR ESGIRETARG
101: HYLQSQELSR EAANLLDCTT WSGAGPGLMD AVTKGALEAE KPVGGIKIEK EAGEWTASKV HPYLPPQNYH TCRFFSARKH GLVDAVVRNN VSDKTAVIAL
201: PGGIGTLDEM FEILALVQLK RIGSVLPVPF IVMNYDSFYS KLFEFIESCE DLGTVYKGEV SALWKVCNSN SEALTYLAEF YELPYGCTKR ESGIRETARG
001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
Arabidopsis Description
Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.