Factsheet for Zm00001d033111_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018533_P003
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50575.1	Zm00001d018533_P003	AT3G19895.1	21798944
AT1G50575.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT1G50575.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93868	Sorghum	cytosol	74.84	71.43
HORVU7Hr1G085160.2	Barley	plastid, vacuole	63.06	60.92
Os03t0587100-04	Rice	plastid	63.69	59.7
TraesCS7D01G353500.1	Wheat	plastid	61.78	58.61
TraesCS7B01G258700.1	Wheat	plastid	61.78	58.43
Solyc07g065180.2.1	Tomato	cytosol, plastid	52.55	54.64
TraesCS7A01G369800.1	Wheat	cytosol, mitochondrion, nucleus	62.1	54.17
KRH46290	Soybean	cytosol	52.23	53.77
PGSC0003DMT400057413	Potato	plastid	52.23	53.42
GSMUA_Achr4P33110_001	Banana	mitochondrion	53.82	52.98
VIT_19s0090g01580.t01	Wine grape	plastid	51.59	52.26
Bra018858.1-P	Field mustard	plastid	49.68	52.0
AT1G50575.1	Thale cress	plastid	50.32	51.63
CDY22805	Canola	plastid	49.04	51.33
CDY37126	Canola	plastid	49.04	51.33
KRG98613	Soybean	plastid	37.9	45.25

Protein Annotations

EMBL:EU968458	EnsemblPlants:Zm00001d033111_P003	EnsemblPlants:Zm00001d033111_T003	EnsemblPlantsGene:Zm00001d033111	EntrezGene:100284461	Gene3D:3.40.50.450
InterPro:LOG_fam	PANTHER:PTHR31208	PANTHER:PTHR31208:SF1	PFAM:PF03641	ProteinID:ONM06791.1	SEG:seg
SUPFAM:SSF102405	UniParc:UPI000182DD39	UniProt:B6TTZ3	MapMan:35.2	:	:

Description

Putative lysine decarboxylase family protein

Coordinates

chr1:+:250442317..250445284

Molecular Weight (calculated)

34294.9 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.181

Length

314 amino acids

Sequence
(BLAST)

001: MSMEAAVGAE FGPHLHPALG FRHSQRRVFF CCWRLHPPRP ASLGLCGGGG ARPRGAIPVA DGDQRRRLRE LEAEAEAEAG SILGPPRSSP REVREEMARC
101: FDLVRRLGRG AVYLGSSRVP PTHPHFLQTT ELAREIARLL GCTTWTGAGP GLMDAAIQGA FEADKPVGGL KIAKEAGEWT SSGFHPYLPP ETYLTCRFFS
201: ARKHGLVDAA VRSSSTDRTA VVALPGGVGT LDELFEILAL IQLERIGSAL PVPVLLLNYD SYYSKLLEFL NDCQEWGTVA PGEVASLWKV CDGNHEALEY
301: LAEFYGVPHN EREY

Best Arabidopsis Sequence Match ( AT1G50575.1 )
(BLAST)

001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG

Arabidopsis Description

Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.