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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 5
  • endoplasmic reticulum 1
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:endoplasmic reticulum
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g009340.2.1
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G50575.1 Solyc04g009340.2.1 AT3G19895.1 21798944
AT1G50575.1 Solyc08g078700.2.1 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400057413 Potato plastid 94.7 93.16
KRH46290 Soybean cytosol 62.91 62.3
VIT_19s0090g01580.t01 Wine grape plastid 63.24 61.61
Bra018858.1-P Field mustard plastid 56.62 57.0
AT1G50575.1 Thale cress plastid 57.62 56.86
CDY22805 Canola plastid 56.29 56.67
CDY37126 Canola plastid 55.96 56.33
TraesCS7D01G353500.1 Wheat plastid 58.94 53.78
GSMUA_Achr4P33110_001 Banana mitochondrion 56.62 53.6
HORVU7Hr1G085160.2 Barley plastid, vacuole 57.62 53.54
TraesCS7B01G258700.1 Wheat plastid 58.28 53.01
Zm00001d033111_P003 Maize cytosol 54.64 52.55
Os03t0587100-04 Rice plastid 57.62 51.94
KRG98613 Soybean plastid 45.03 51.71
EER93868 Sorghum cytosol 54.64 50.15
TraesCS7A01G369800.1 Wheat cytosol, mitochondrion, nucleus 58.94 49.44
Protein Annotations
EnsemblPlants:Solyc07g065180.2.1EnsemblPlantsGene:Solyc07g065180.2Gene3D:3.40.50.450InterPro:LOG_famPANTHER:PTHR31208PANTHER:PTHR31208:SF1
PFAM:PF03641SUPFAM:SSF102405UniParc:UPI000276CA45UniProt:K4CHJ7MapMan:35.2:
Description
No Description!
Coordinates
chr7:+:67052070..67056033
Molecular Weight (calculated)
33702.4 Da
IEP (calculated)
7.748
GRAVY (calculated)
-0.217
Length
302 amino acids
Sequence
(BLAST)
001: MGFAADSTIS MANIFLRSSH HHKKDVNLGS CMRKETWGFN LYLPKLKYQS RISFCCKNES IDFEERTSPN EVKKEIEQCY ELIHRLGRGV VYLGSSRIGP
101: GHPHYIKTFE LGNKIATLLD CTTWSGAGPG LMDAATQGAL QAGKPVGGFK IGKEAGEWTA TNFHPYLPSE SYLTCRFFSA RKHGLVDAVV RCRSSERTAV
201: IALPGGIGTL DEVFEIMALI QLERIGSQLP VPLLLMNYDS FYTNLLEFLN DCEKWGTVSK GEVESLWKIC TNNSEALDYL AEFYGLSTIQ TSRKAHLKIN
301: HG
Best Arabidopsis Sequence Match ( AT1G50575.1 )
(BLAST)
001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
Arabidopsis Description
Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.