Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22805 | Canola | plastid | 78.1 | 79.67 |
| Bra018858.1-P | Field mustard | plastid | 77.12 | 78.67 |
| CDY37126 | Canola | plastid | 76.8 | 78.33 |
| Solyc07g065180.2.1 | Tomato | cytosol, plastid | 56.86 | 57.62 |
| KRH46290 | Soybean | cytosol | 55.88 | 56.07 |
| VIT_19s0090g01580.t01 | Wine grape | plastid | 56.54 | 55.81 |
| PGSC0003DMT400057413 | Potato | plastid | 55.56 | 55.37 |
| Os03t0587100-04 | Rice | plastid | 57.84 | 52.84 |
| HORVU7Hr1G085160.2 | Barley | plastid, vacuole | 54.25 | 51.08 |
| GSMUA_Achr4P33110_001 | Banana | mitochondrion | 52.61 | 50.47 |
| TraesCS7D01G353500.1 | Wheat | plastid | 54.58 | 50.45 |
| Zm00001d033111_P003 | Maize | cytosol | 51.63 | 50.32 |
| KRG98613 | Soybean | plastid | 43.14 | 50.19 |
| TraesCS7B01G258700.1 | Wheat | plastid | 54.25 | 50.0 |
| EER93868 | Sorghum | cytosol | 52.94 | 49.24 |
| TraesCS7A01G369800.1 | Wheat | cytosol, mitochondrion, nucleus | 53.92 | 45.83 |
Protein Annotations
| Gene3D:3.40.50.450 | MapMan:35.2 | EntrezGene:841479 | ProteinID:AEE32565.1 | ArrayExpress:AT1G50575 | EnsemblPlantsGene:AT1G50575 |
| RefSeq:AT1G50575 | TAIR:AT1G50575 | RefSeq:AT1G50575-TAIR-G | EnsemblPlants:AT1G50575.1 | TAIR:AT1G50575.1 | EMBL:AY059883 |
| EMBL:AY093371 | InterPro:LOG_fam | RefSeq:NP_564577.1 | PFAM:PF03641 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31208 | PANTHER:PTHR31208:SF1 | UniProt:Q93XW9 | SUPFAM:SSF102405 | UniParc:UPI00000A1EAB |
Description
Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
Coordinates
chr1:-:18728634..18730498
Molecular Weight (calculated)
33973.7 Da
IEP (calculated)
6.403
GRAVY (calculated)
-0.182
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.