Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033111_P003 | Maize | cytosol | 71.43 | 74.84 |
| Os03t0587100-04 | Rice | plastid | 68.69 | 67.46 |
| HORVU7Hr1G085160.2 | Barley | plastid, vacuole | 65.05 | 65.85 |
| TraesCS7D01G353500.1 | Wheat | plastid | 64.44 | 64.05 |
| TraesCS7B01G258700.1 | Wheat | plastid | 63.53 | 62.95 |
| TraesCS7A01G369800.1 | Wheat | cytosol, mitochondrion, nucleus | 63.53 | 58.06 |
| GSMUA_Achr4P33110_001 | Banana | mitochondrion | 53.5 | 55.17 |
| VIT_19s0090g01580.t01 | Wine grape | plastid | 51.98 | 55.16 |
| Solyc07g065180.2.1 | Tomato | cytosol, plastid | 50.15 | 54.64 |
| PGSC0003DMT400057413 | Potato | plastid | 49.54 | 53.09 |
| Bra018858.1-P | Field mustard | plastid | 48.33 | 53.0 |
| AT1G50575.1 | Thale cress | plastid | 49.24 | 52.94 |
| KRH46290 | Soybean | cytosol | 48.94 | 52.79 |
| CDY22805 | Canola | plastid | 48.02 | 52.67 |
| CDY37126 | Canola | plastid | 47.72 | 52.33 |
| KRG98613 | Soybean | plastid | 38.91 | 48.67 |
Protein Annotations
| EnsemblPlants:EER93868 | EnsemblPlantsGene:SORBI_3001G178000 | EntrezGene:8064540 | Gene3D:3.40.50.450 | InterPro:LOG_fam | PANTHER:PTHR31208 |
| PANTHER:PTHR31208:SF1 | PFAM:PF03641 | ProteinID:EER93868 | ProteinID:EER93868.1 | RefSeq:XP_002466870.1 | SEG:seg |
| SUPFAM:SSF102405 | UniParc:UPI0001A8261D | UniProt:C5WU53 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr1:-:15004618..15006729
Molecular Weight (calculated)
35836.6 Da
IEP (calculated)
7.138
GRAVY (calculated)
-0.251
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEAAAASS VGAEFGPALG FRNIHRRTLP YCWRPRSPRP ASLSLCGGWG ARPRGAIAAA SGDQRRRQLG ELEAEAEAGS ALGPTRSSPR EVREEMARCF
101: DLVRRLGRGA VYLGSSRVPP THPHFLQTTE LAREIARLLD CTTWTGAGPG LMDAAIQGAL EAGKPVGGLK IAKEAGEWTS SGFHPYLPPE TYLTCRFFSA
201: RKHGLVDAAV RSSPTDRTAV VALPGGVGTL DELFEIMALI QLERIGSALP VPFLLLNYDS YYSKLLDFLN DCQEWGTVAP GEVESLWKVC DGNHEALEYL
301: AEFYNVPADQ RNYQISPQLK QHRTSYAAS
101: DLVRRLGRGA VYLGSSRVPP THPHFLQTTE LAREIARLLD CTTWTGAGPG LMDAAIQGAL EAGKPVGGLK IAKEAGEWTS SGFHPYLPPE TYLTCRFFSA
201: RKHGLVDAAV RSSPTDRTAV VALPGGVGTL DELFEIMALI QLERIGSALP VPFLLLNYDS YYSKLLDFLN DCQEWGTVAP GEVESLWKVC DGNHEALEYL
301: AEFYNVPADQ RNYQISPQLK QHRTSYAAS
001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
Arabidopsis Description
Putative lysine decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q93XW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.