Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G383400.1 | Wheat | cytosol | 96.75 | 97.87 |
| TraesCS3B01G422600.2 | Wheat | cytosol | 97.73 | 97.73 |
| HORVU3Hr1G088460.2 | Barley | cytosol | 96.43 | 96.27 |
| HORVU3Hr1G088480.1 | Barley | mitochondrion | 96.59 | 91.54 |
| Os01t0906600-01 | Rice | cytosol | 81.66 | 83.97 |
| Zm00001d042450_P002 | Maize | cytosol | 80.68 | 81.48 |
| EES04067 | Sorghum | cytosol | 80.84 | 81.37 |
| GSMUA_Achr8P09010_001 | Banana | cytosol | 61.04 | 60.35 |
| VIT_17s0000g09890.t01 | Wine grape | cytosol | 57.79 | 54.1 |
| AT5G63200.1 | Thale cress | cytosol | 56.49 | 53.62 |
| KRH63690 | Soybean | cytosol | 54.87 | 52.48 |
| KRH54254 | Soybean | cytosol, nucleus | 53.57 | 51.32 |
| Solyc06g071850.2.1 | Tomato | nucleus | 54.71 | 51.29 |
| PGSC0003DMT400069629 | Potato | cytosol | 54.55 | 51.14 |
| CDY48133 | Canola | cytosol | 54.71 | 51.14 |
| CDY16731 | Canola | cytosol | 54.55 | 50.83 |
| Bra035851.1-P | Field mustard | cytosol | 54.38 | 50.6 |
| Bra007638.1-P | Field mustard | cytosol | 4.55 | 49.12 |
| CDY08125 | Canola | cytosol | 4.71 | 45.31 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G390800.2 | EnsemblPlantsGene:TraesCS3A01G390800 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| ncoils:Coil | PANTHER:PTHR45523 | PFAM:PF13176 | PFAM:PF13181 | PFscan:PS50005 | PFscan:PS50293 |
| SEG:seg | SMART:SM00028 | SUPFAM:SSF48452 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3A:+:638978547..638983186
Molecular Weight (calculated)
66919.7 Da
IEP (calculated)
5.385
GRAVY (calculated)
-0.140
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEAQPPPPS RAMMLADLNV DPPESDGEDH PPTPKPNPAI AAAAVAAAAA APVVPVDSST RSCNEEGSLA KNTTVVKEPD TVECEDVEQH CPGASVSREE
101: KVSNLKAALV NVARKMPKNA HAHFMLGLMY QRLGQPQKAI IAYDKSSEIL LQDEQEVRRP DLLSSVRIHH AQCILQASMG DSFDEELDTS ELSEILVKLK
201: SSVELDPRQA AVWNILGLVL LRGGQLQSAI SVFSTLTTVA PDYLDSLANL GVAYIQSGDL ELSTKCFQEL VLKDQSHPAA LVNYGALLLC KYGSLAAAGA
301: SGTVSAGSYL HQKEALVAAK ECLLAAVRSD PKAASIWVNL ANAYYMAGEH RNSKRCLEQA AKFEPNHMPA RYAIAVHRIR DAVRLQCSDD QLIWAANEMA
401: TVLKEGDTSV VDLPVAWAGL AMAHRAQHEI AAAYDGEQTI LNEAEERALY TLKQAIQEDP DDAVQWHQLG LYNMCTTQFS RSVNFLKAAI ARSPECCYAW
501: SNLGIALQLS NDPSSETVYK RALVLSSSQQ SYAILSNIGI LYRQHRLYEL ARKMLSRSLE ICPGYAPANN NLGLVFVAEG RWEDAVSCFE KAVKSDDLLD
601: AAKSNLAKAL ALAKKQ
101: KVSNLKAALV NVARKMPKNA HAHFMLGLMY QRLGQPQKAI IAYDKSSEIL LQDEQEVRRP DLLSSVRIHH AQCILQASMG DSFDEELDTS ELSEILVKLK
201: SSVELDPRQA AVWNILGLVL LRGGQLQSAI SVFSTLTTVA PDYLDSLANL GVAYIQSGDL ELSTKCFQEL VLKDQSHPAA LVNYGALLLC KYGSLAAAGA
301: SGTVSAGSYL HQKEALVAAK ECLLAAVRSD PKAASIWVNL ANAYYMAGEH RNSKRCLEQA AKFEPNHMPA RYAIAVHRIR DAVRLQCSDD QLIWAANEMA
401: TVLKEGDTSV VDLPVAWAGL AMAHRAQHEI AAAYDGEQTI LNEAEERALY TLKQAIQEDP DDAVQWHQLG LYNMCTTQFS RSVNFLKAAI ARSPECCYAW
501: SNLGIALQLS NDPSSETVYK RALVLSSSQQ SYAILSNIGI LYRQHRLYEL ARKMLSRSLE ICPGYAPANN NLGLVFVAEG RWEDAVSCFE KAVKSDDLLD
601: AAKSNLAKAL ALAKKQ
001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.