Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63200.1 | CDX89437 | AT4G25200.1 | 21798944 |
| AT5G63200.1 | CDY03368 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035851.1-P | Field mustard | cytosol | 98.03 | 97.89 |
| CDY48133 | Canola | cytosol | 96.07 | 96.36 |
| AT5G63200.1 | Thale cress | cytosol | 87.75 | 89.37 |
| CDY08125 | Canola | cytosol | 6.81 | 70.31 |
| VIT_17s0000g09890.t01 | Wine grape | cytosol | 63.99 | 64.29 |
| KRH63690 | Soybean | cytosol | 59.76 | 61.34 |
| KRH54254 | Soybean | cytosol, nucleus | 59.46 | 61.12 |
| PGSC0003DMT400069629 | Potato | cytosol | 59.0 | 59.36 |
| Solyc06g071850.2.1 | Tomato | nucleus | 58.85 | 59.21 |
| Zm00001d042450_P002 | Maize | cytosol | 52.5 | 56.89 |
| GSMUA_Achr8P09010_001 | Banana | cytosol | 53.25 | 56.5 |
| Os01t0906600-01 | Rice | cytosol | 51.13 | 56.43 |
| EES04067 | Sorghum | cytosol | 52.19 | 56.37 |
| TraesCS3D01G383400.1 | Wheat | cytosol | 50.68 | 55.01 |
| TraesCS3A01G390800.2 | Wheat | cytosol | 50.83 | 54.55 |
| HORVU3Hr1G088460.2 | Barley | cytosol | 50.83 | 54.46 |
| TraesCS3B01G422600.2 | Wheat | cytosol | 50.68 | 54.38 |
| HORVU3Hr1G088480.1 | Barley | mitochondrion | 51.44 | 52.31 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | UniProt:A0A078FUS1 | EnsemblPlants:CDY16731 | ProteinID:CDY16731 | ProteinID:CDY16731.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00094599001 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | PFAM:PF07719 | PFAM:PF13181 | PFAM:PF13424 | PFAM:PF13432 | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR45523 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_2 | InterPro:TPR_repeat | UniParc:UPI0004EDB900 | SEG:seg | : | : |
Description
BnaA09g06510DBnaA09g06510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUS1]
Coordinates
chrLK032067:-:72711..76108
Molecular Weight (calculated)
72363.9 Da
IEP (calculated)
5.270
GRAVY (calculated)
-0.319
Length
661 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPETIAVK HEPTTVDSPS PSSAVAVDNK PARPQKLVVL ADLNFNPPES DDLDSSSIQI PTPSTTRLSN EESNQDGGLL TCKEVEPGEL EAKKISKVGK
101: CRSRSKIEGS SDCGVDADGD QANQGVPASR EEKISNLKMG LIHVARKMPR NAHAHFILGL MFQRLGQSQK AIPEYEKAEE ILLGCEPEIA RPELLLLVQM
201: HHGQCLLLDG FADSDSVKEI EGEELEEILS KLKDSMKLDV RQATVWNTLG LMLLKAGCLM SAISVLSSLL ALVPDNYDCL TNLGVAYLQS GDLELSAKCF
301: QDLVLKDHNH PGALINYAAE LLCKHGSTVA GAGANGGPDA SEDQKAHMNV AKECLLAAVR ADPKSAHAWV NLANSYYLMG DHRSSSKCLE KAAKLDPNCM
401: ATRFAVAVQR IKDAERSQDA SDQLSWAGNE MASVIREGES VPIDPPIAWA GLAMAHKAHH EIAAAFVADR NELTEMEERA MFSLKQAVSE DPEDAVRWHQ
501: LGLHCLCSQQ YILSQKYLKA AVSRSRECSY AWSNLGISLQ LSDEQSEAEE VYKRALAVSR EDQAHATFSN LGNLYRQKKQ YELSKAMFSK ALDLKPGYAP
601: AYNNLGLVFV AERRWEEAKF CFEKALEADS LLDAAQSNLL KAKTMSRLCT CFTSSTVVQD S
101: CRSRSKIEGS SDCGVDADGD QANQGVPASR EEKISNLKMG LIHVARKMPR NAHAHFILGL MFQRLGQSQK AIPEYEKAEE ILLGCEPEIA RPELLLLVQM
201: HHGQCLLLDG FADSDSVKEI EGEELEEILS KLKDSMKLDV RQATVWNTLG LMLLKAGCLM SAISVLSSLL ALVPDNYDCL TNLGVAYLQS GDLELSAKCF
301: QDLVLKDHNH PGALINYAAE LLCKHGSTVA GAGANGGPDA SEDQKAHMNV AKECLLAAVR ADPKSAHAWV NLANSYYLMG DHRSSSKCLE KAAKLDPNCM
401: ATRFAVAVQR IKDAERSQDA SDQLSWAGNE MASVIREGES VPIDPPIAWA GLAMAHKAHH EIAAAFVADR NELTEMEERA MFSLKQAVSE DPEDAVRWHQ
501: LGLHCLCSQQ YILSQKYLKA AVSRSRECSY AWSNLGISLQ LSDEQSEAEE VYKRALAVSR EDQAHATFSN LGNLYRQKKQ YELSKAMFSK ALDLKPGYAP
601: AYNNLGLVFV AERRWEEAKF CFEKALEADS LLDAAQSNLL KAKTMSRLCT CFTSSTVVQD S
001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.