Factsheet for GSMUA_Achr8P09010_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr7P15030_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63200.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT5G63200.1	GSMUA_Achr10P...	AT5G02150.1	21798944
AT5G63200.1	GSMUA_Achr7P15030_001	AT5G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0906600-01	Rice	cytosol	61.32	63.77
EES04067	Sorghum	cytosol	62.12	63.24
Zm00001d042450_P002	Maize	cytosol	61.48	62.79
TraesCS3D01G383400.1	Wheat	cytosol	60.19	61.58
TraesCS3A01G390800.2	Wheat	cytosol	60.35	61.04
VIT_17s0000g09890.t01	Wine grape	cytosol	64.37	60.94
TraesCS3B01G422600.2	Wheat	cytosol	60.03	60.71
HORVU3Hr1G088460.2	Barley	cytosol	60.03	60.62
KRH63690	Soybean	cytosol	60.83	58.85
HORVU3Hr1G088480.1	Barley	mitochondrion	60.51	58.0
KRH54254	Soybean	cytosol, nucleus	59.71	57.85
AT5G63200.1	Thale cress	cytosol	58.27	55.93
PGSC0003DMT400069629	Potato	cytosol	58.27	55.25
Solyc06g071850.2.1	Tomato	nucleus	58.11	55.1
Bra035851.1-P	Field mustard	cytosol	57.14	53.78
CDY48133	Canola	cytosol	56.5	53.41
CDY16731	Canola	cytosol	56.5	53.25
Bra007638.1-P	Field mustard	cytosol	4.49	49.12
CDY08125	Canola	cytosol	4.65	45.31

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr8G09010_001
EnsemblPlants:GSMUA_Achr8P09010_001	EnsemblPlants:GSMUA_Achr8T09010_001	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M0TNV4
PFAM:PF07719	PFAM:PF13181	PFAM:PF13424	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR45523	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2
InterPro:TPR_repeat	UniParc:UPI000296B75D	SEG:seg	:	:	:

Description

tetratricopeptide repeat domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G09010_001]

Coordinates

chr8:+:6126081..6140473

Molecular Weight (calculated)

68335.6 Da

IEP (calculated)

5.313

GRAVY (calculated)

-0.205

Length

623 amino acids

Sequence
(BLAST)

001: MSESQPVANG EPVVGENQAK PEEVMKRPPP SRPVIIADLN VDPPESDGED CALDSVPHSI PRNSMDESST VNSAAIIRDS DIIDGEDLDQ HCQGVSVSRE
101: EKVSSLKAGL VHMARKMPKN AHTHFVLGLM YQRLGQPQKA VLAFEKSTEI LQKDEEEIQR TDLLSLVLIH HAQCLLLANA GDSSEKELEG DELEEILVKL
201: KCSVESDAKQ AAFWNTLGLL LLRTGRLQSA ISVLSSLLAI VPDYLDSLAN LGIAYLQSGN LEYSAKCFQN LLLKDQNHPA ALMNYATLLL CKYASIIPGP
301: GANAGEGAFV HRVEATTVAK ECLLVAVKAD PRAGPLWVNL ANAYYVSGDH RSAKKCLEKA ANLEPIQMST RYAIAVHRIK DVERTQDSRE QLSWAANEMA
401: SILKEGDPAI IDLPIAWAGL AMAHRAQHEI ASAFGSGQMD LDEADERALY TLKQAIEEDP DDAIQWHQLG LHNLCTMQFK ASVKFLKAAV ARSRECSFAW
501: SNLGIALQLT DDPSSAELVY KKALSFAANQ HAHAILSNLG NLYRRQKRFN DAKVIFAKSL ELCPGYAPAY NNLGLVYVAE GLWEEAKTCF EKALRSDPLL
601: DAAKSNMTKA DAMTRIQETM RTI

Best Arabidopsis Sequence Match ( AT5G63200.1 )
(BLAST)

001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.