Factsheet for Os01t0906600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0758000-01
Os03t0271400-01
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63200.1	Os02t0758000-01	AT4G25200.1	21798944
AT5G63200.1	Os06t0219500-00	AT4G25200.1	21798944
AT5G63200.1	Os03t0271400-01	AT5G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G383400.1	Wheat	cytosol	84.47	83.09
EES04067	Sorghum	cytosol	84.64	82.84
Zm00001d042450_P002	Maize	cytosol	84.31	82.79
TraesCS3B01G422600.2	Wheat	cytosol	83.97	81.66
TraesCS3A01G390800.2	Wheat	cytosol	83.97	81.66
HORVU3Hr1G088460.2	Barley	cytosol	83.31	80.88
HORVU3Hr1G088480.1	Barley	mitochondrion	83.31	76.77
GSMUA_Achr8P09010_001	Banana	cytosol	63.77	61.32
VIT_17s0000g09890.t01	Wine grape	cytosol	61.94	56.38
KRH63690	Soybean	cytosol	59.27	55.12
KRH54254	Soybean	cytosol, nucleus	58.1	54.12
AT5G63200.1	Thale cress	cytosol	58.26	53.77
Solyc06g071850.2.1	Tomato	nucleus	57.1	52.05
PGSC0003DMT400069629	Potato	cytosol	56.93	51.9
CDY48133	Canola	cytosol	56.59	51.44
CDY16731	Canola	cytosol	56.43	51.13
Bra035851.1-P	Field mustard	cytosol	56.26	50.91
Bra007638.1-P	Field mustard	cytosol	4.51	47.37
CDY08125	Canola	cytosol	4.67	43.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	EntrezGene:4324977	EMBL:AK100885	ProteinID:BAD82737.1	ProteinID:BAF07048.1
ProteinID:BAS75797.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EnsemblPlantsGene:Os01g0906600	EnsemblPlants:Os01t0906600-01	PFAM:PF13181	PFAM:PF13432	PFAM:PF14559
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR45523	UniProt:Q5N719	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000049EAFF	RefSeq:XP_015622051.1	SEG:seg

Description

Tetratricopeptide-like helical domain containing protein. (Os01t0906600-01)

Coordinates

chr1:-:39467660..39473818

Molecular Weight (calculated)

65062.1 Da

IEP (calculated)

5.269

GRAVY (calculated)

-0.196

Length

599 amino acids

Sequence
(BLAST)

001: MLADLNVDPP ESDGEDQPPT PNPNVNPATA AVTAATVVAI DSSTRSSNDE GSLAKSVITT KEPDTVECED ADQHCQGASV AREEKVSNLK AALVHVARKM
101: PKNAHAHFML GLMYQRLGQP QKAIAAYEKS SEILLQDEEE VRRPDLLSSV RIHHAQCILQ TSMGDTFDEE LESGELDEIL VKMKSSVESD PRQAAVWNIL
201: GLVLLRSGQL QSAISVLSSL TVVAPDYLDS LANLGVAYIQ SGNLELATKC FQELVIKDQN HPAALVNYAA LLLCKYGSFA AGSGGNVSAG SCLHQKEGLA
301: VAKECLLAAV KADPKAASVW VNLANAYYMA GEHRNSKRCL EQAAKHEPSH MPARYAIAVH RIRDAVRSQC SDDQLLWASN EMATVLKEGD PSAVDAPIAW
401: AGLAMAHRAQ HEIAAAYDTE QINLSDVEER ALYTLKQAIQ EDPDDAVQWH QLGLYNICTT QFSRSVNFLK AAVARSPDCS YVWSNLGIAL QLSDDSSCET
501: VYKRALILSS SQQSYAILSN LGILYRQHGR YELARRMLLR SLELCPGHAP ANNNLGLVSI AEGRYEEAIS CFEKSLQSDP LLDAAKSNLA KVLALSKKQ

Best Arabidopsis Sequence Match ( AT5G63200.1 )
(BLAST)

001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.