Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63200.1 | CDX89437 | AT4G25200.1 | 21798944 |
| AT5G63200.1 | CDY03368 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16731 | Canola | cytosol | 96.36 | 96.07 |
| AT5G63200.1 | Thale cress | cytosol | 86.49 | 87.83 |
| CDY08125 | Canola | cytosol | 7.13 | 73.44 |
| VIT_17s0000g09890.t01 | Wine grape | cytosol | 62.97 | 63.07 |
| KRH63690 | Soybean | cytosol | 59.94 | 61.34 |
| KRH54254 | Soybean | cytosol, nucleus | 59.48 | 60.96 |
| PGSC0003DMT400069629 | Potato | cytosol | 58.73 | 58.9 |
| Solyc06g071850.2.1 | Tomato | nucleus | 58.73 | 58.9 |
| Zm00001d042450_P002 | Maize | cytosol | 52.96 | 57.21 |
| EES04067 | Sorghum | cytosol | 52.81 | 56.86 |
| Os01t0906600-01 | Rice | cytosol | 51.44 | 56.59 |
| GSMUA_Achr8P09010_001 | Banana | cytosol | 53.41 | 56.5 |
| TraesCS3D01G383400.1 | Wheat | cytosol | 50.83 | 55.01 |
| TraesCS3A01G390800.2 | Wheat | cytosol | 51.14 | 54.71 |
| HORVU3Hr1G088460.2 | Barley | cytosol | 51.14 | 54.62 |
| TraesCS3B01G422600.2 | Wheat | cytosol | 50.83 | 54.38 |
| HORVU3Hr1G088480.1 | Barley | mitochondrion | 51.75 | 52.46 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | UniProt:A0A078IG70 | EnsemblPlants:CDY48133 | ProteinID:CDY48133 | ProteinID:CDY48133.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00088930001 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | PFAM:PF07719 | PFAM:PF13181 | PFAM:PF13424 | PFAM:PF13432 | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR45523 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_2 | InterPro:TPR_repeat | UniParc:UPI0004EC7B99 | SEG:seg | : | : |
Description
BnaCnng15750DBnaCnng15750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG70]
Coordinates
chrLK032755:+:91636..94822
Molecular Weight (calculated)
72205.7 Da
IEP (calculated)
5.347
GRAVY (calculated)
-0.321
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPETIAVK YEPTTVDSPS SSSAVAVDNK PARPQKLVVL ADLNFNPPES DDLDSSSIQI PTPSTTRLSN EESNQDGGCK EVEPGEIEAK KISKVGKCRP
101: RSKIEGSTDC GVDADGDQAN QGVSASREEK ISNLKMGLIH VARKMPRNAH AHFILGLMFQ RLGQSQKAIP EYEKAEEILL GCEPEIARPE LLLLVQMHHG
201: QCLLLDGFAD SDSVKEIEGV ELEEILSKLK DSMKLDVRQA TVWNTLGLML LKAGCLMSAI SVLSSLLALV PDNYDCLTNL GVAYLQSGDL ELSAKCFQDL
301: VFKDHNHPAA LINYAAELLC KHSSTVAGAG ANGGPVASED QKTHLNVAKE CLLAAVRADP KSAHAWVNLA NSYYMMGDHR SSSKCLEKAA KLDPNCMATR
401: FAVAVQRIKD AERSQDAGDQ LSWAGNEMAS VIREGESVPI DPPIAWAGLA MAHKAHHEIA AAFVADRNEL TEMEERAMYS LKQAVSEDPE DAVRWHQLGL
501: HCLCSQQYKL SQKYLKTAIS RSRDCSYAWS NLGISLQLSD EQSEAEEVYK RALAVSTTED QAHATFSNLG NLYRQKKQYE LSKAMFSKAL DLKPGYAPAY
601: NNLGLVFVAE RRWEEAKFCF EKALEADSLL DAAQSNLLKA KTMSRLCTCF TSSTVVQDS
101: RSKIEGSTDC GVDADGDQAN QGVSASREEK ISNLKMGLIH VARKMPRNAH AHFILGLMFQ RLGQSQKAIP EYEKAEEILL GCEPEIARPE LLLLVQMHHG
201: QCLLLDGFAD SDSVKEIEGV ELEEILSKLK DSMKLDVRQA TVWNTLGLML LKAGCLMSAI SVLSSLLALV PDNYDCLTNL GVAYLQSGDL ELSAKCFQDL
301: VFKDHNHPAA LINYAAELLC KHSSTVAGAG ANGGPVASED QKTHLNVAKE CLLAAVRADP KSAHAWVNLA NSYYMMGDHR SSSKCLEKAA KLDPNCMATR
401: FAVAVQRIKD AERSQDAGDQ LSWAGNEMAS VIREGESVPI DPPIAWAGLA MAHKAHHEIA AAFVADRNEL TEMEERAMYS LKQAVSEDPE DAVRWHQLGL
501: HCLCSQQYKL SQKYLKTAIS RSRDCSYAWS NLGISLQLSD EQSEAEEVYK RALAVSTTED QAHATFSNLG NLYRQKKQYE LSKAMFSKAL DLKPGYAPAY
601: NNLGLVFVAE RRWEEAKFCF EKALEADSLL DAAQSNLLKA KTMSRLCTCF TSSTVVQDS
001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.