Factsheet for Zm00001d042450_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d028588_P001
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63200.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT5G63200.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT5G63200.1	Zm00001d028588_P001	AT5G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04067	Sorghum	cytosol	95.41	95.1
Os01t0906600-01	Rice	cytosol	82.79	84.31
TraesCS3D01G383400.1	Wheat	cytosol	81.31	81.44
HORVU3Hr1G088460.2	Barley	cytosol	81.64	80.71
TraesCS3A01G390800.2	Wheat	cytosol	81.48	80.68
TraesCS3B01G422600.2	Wheat	cytosol	81.31	80.52
HORVU3Hr1G088480.1	Barley	mitochondrion	81.64	76.62
GSMUA_Achr8P09010_001	Banana	cytosol	62.79	61.48
VIT_17s0000g09890.t01	Wine grape	cytosol	58.85	54.56
AT5G63200.1	Thale cress	cytosol	58.03	54.55
KRH63690	Soybean	cytosol	57.38	54.35
KRH54254	Soybean	cytosol, nucleus	56.72	53.81
CDY48133	Canola	cytosol	57.21	52.96
CDY16731	Canola	cytosol	56.89	52.5
Bra035851.1-P	Field mustard	cytosol	56.72	52.27
PGSC0003DMT400069629	Potato	cytosol	55.57	51.6
Solyc06g071850.2.1	Tomato	nucleus	55.41	51.45
Bra007638.1-P	Field mustard	cytosol	4.26	45.61
CDY08125	Canola	cytosol	4.43	42.19

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100501933	MapMan:35.2	EMBL:BT086620	UniProt:C4J723	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	ProteinID:ONM35403.1
PFAM:PF07719	PFAM:PF13181	PFAM:PF13432	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR45523	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2
InterPro:TPR_repeat	UniParc:UPI0001A4BCCD	EnsemblPlantsGene:Zm00001d042450	EnsemblPlants:Zm00001d042450_P002	EnsemblPlants:Zm00001d042450_T002	SEG:seg

Description

tetratricopeptide repeat (TPR)-containing protein

Coordinates

chr3:+:168095894..168110772

Molecular Weight (calculated)

66577.0 Da

IEP (calculated)

5.590

GRAVY (calculated)

-0.230

Length

610 amino acids

Sequence
(BLAST)

001: MPETHPPPPR PVMLADLNFE PAESDGEDRP PTPAPNPAAA AAAAAAPAVA ADSSTKSGNE EGGLTKTVIT TKDTDTVECE DVDQHCQGAS APREEKVSNL
101: KAALVHVARK MPKNAHAHFM LGLMYQRLGQ AQKAIASYEK STEILLQDEE EVRRPDLLSS VRIHHAQCIL QASMGDSFDE ELETGELDDI LSKLKSSVEL
201: DHRQAAVWNI LGLVLLRGGQ IQSAISVLSS LTAVAPDYLD SLANLGVAYI QSGKLELSAK CFQELLLKDQ NHPAALVNYA VLLLCRYGSL SAGAGGNVST
301: GPYVHQKEAL VVAKECLLAA VKADPRAASV WVNLANAYYM DGEHKNSKRC LEQAAKLEPN HMPARYAIAV HRIRDAVRSQ CSDDQLLWAA NEMATVLKEG
401: DPSAVDAPIA WAGLAMAHRA QHEIAAIYDT ENINLNDAEE RAQYTLKQAI QEDPDDAVQW HQLGLYNICM TRFSRSVNFL KAALARSPDC SYAWSNLGIA
501: LQLSDDPSSE TVYKRALVLS STQQLHAIFS NLGILYRQHR NYEFARKMLL RSLELCPGFA PASNNLGLVF VAEGRWEDAK SWFEKALQSD PLLDAAKSNL
601: LKVLTLSTKQ

Best Arabidopsis Sequence Match ( AT5G63200.1 )
(BLAST)

001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.