Factsheet for PGSC0003DMT400069629

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400022748

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63200.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT5G63200.1	PGSC0003DMT400022748	AT5G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071850.2.1	Tomato	nucleus	96.65	96.65
VIT_17s0000g09890.t01	Wine grape	cytosol	66.21	66.11
KRH63690	Soybean	cytosol	63.17	64.44
KRH54254	Soybean	cytosol, nucleus	62.71	64.07
AT5G63200.1	Thale cress	cytosol	59.82	60.55
Bra035851.1-P	Field mustard	cytosol	59.67	59.21
CDY16731	Canola	cytosol	59.36	59.0
CDY48133	Canola	cytosol	58.9	58.73
GSMUA_Achr8P09010_001	Banana	cytosol	55.25	58.27
Bra007638.1-P	Field mustard	cytosol	5.02	57.89
Os01t0906600-01	Rice	cytosol	51.9	56.93
Zm00001d042450_P002	Maize	cytosol	51.6	55.57
EES04067	Sorghum	cytosol	51.6	55.39
TraesCS3D01G383400.1	Wheat	cytosol	51.29	55.34
TraesCS3A01G390800.2	Wheat	cytosol	51.14	54.55
HORVU3Hr1G088460.2	Barley	cytosol	51.14	54.46
TraesCS3B01G422600.2	Wheat	cytosol	50.99	54.38
CDY08125	Canola	cytosol	5.18	53.12
HORVU3Hr1G088480.1	Barley	mitochondrion	51.45	52.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102581966	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1CKT0	PFAM:PF07719
PFAM:PF13181	PFAM:PF13424	PFAM:PF14559	EnsemblPlantsGene:PGSC0003DMG400027069	PGSC:PGSC0003DMG400027069	EnsemblPlants:PGSC0003DMT400069629
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR45523	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI00029553F9	RefSeq:XP_006347418.1	SEG:seg

Description

O-linked n-acetylglucosamine transferase, ogt [Source:PGSC_GENE;Acc:PGSC0003DMG400027069]

Coordinates

chr6:+:52649368..52659134

Molecular Weight (calculated)

71921.9 Da

IEP (calculated)

5.946

GRAVY (calculated)

-0.258

Length

657 amino acids

Sequence
(BLAST)

001: MSEIPASNSV KIPSMKSECP GVDRTSGNLR LQPPLQYQPS KIVLADLNVD PPDSDGNDSV PVAALSPACI SRVIADEICQ DKLKKDIEIA ETEGKQLKKL
101: GKCRSRMGKL DCPPDCNGAD AEADHNVHGV PSSREEKVSS LKTGLIHVAR KMPKNAHAHF VLGLMYQRMG QPQKAILAYE KSEEILVRSE EAIDRPELLS
201: LVQVHHAQCI LLGTLEDCSS DEELDPEELE NILAKLKEAV KADVRQASIW NALGIILLRS GRLQSAISVF STLLEISPDN LDCLGNLGIA CLQSGNLELS
301: EKCFQDLLLK DQNHPTALIN YAALILYKYG SVVAGAGANT LYGTSADQVT AANVAKECLL AALKADSKAA HIWTNLANAY YLMGDHRSSA KCLEKAGKID
401: PNCLATRYAV GVHRIRDAER SQNPNEQLSW AGSEMASILR EGDSTSIEPP IAWAGLAMVH RAQHEIVAGF EIEHNELVEV KEHAIYSLKQ AIAEDPADAV
501: QWHQLGLHSL CTQQFKTSQM YLKAAVARRK DCTYAWSNLG ISLQLSEESS QAEEVYKQAL SLATPKQAHT IFSNLGNLYR QLKQYECAKA MFNKSLELQP
601: GYAPALNNLG LVYVAEGKWN EAKDSFDKAI QADPLLDAAK SNMIKASNMF NMYTSMS

Best Arabidopsis Sequence Match ( AT5G63200.1 )
(BLAST)

001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.