Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra013872.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63200.1 | Bra013872.1-P | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08125 | Canola | cytosol | 87.72 | 78.12 |
| AT5G63200.1 | Thale cress | cytosol | 77.19 | 6.78 |
| Bra035851.1-P | Field mustard | cytosol | 77.19 | 6.65 |
| VIT_17s0000g09890.t01 | Wine grape | cytosol | 59.65 | 5.17 |
| Solyc06g071850.2.1 | Tomato | nucleus | 57.89 | 5.02 |
| PGSC0003DMT400069629 | Potato | cytosol | 57.89 | 5.02 |
| KRH54254 | Soybean | cytosol, nucleus | 56.14 | 4.98 |
| KRH63690 | Soybean | cytosol | 56.14 | 4.97 |
| TraesCS3D01G383400.1 | Wheat | cytosol | 49.12 | 4.6 |
| TraesCS3A01G390800.2 | Wheat | cytosol | 49.12 | 4.55 |
| TraesCS3B01G422600.2 | Wheat | cytosol | 49.12 | 4.55 |
| HORVU3Hr1G088460.2 | Barley | cytosol | 49.12 | 4.54 |
| Os01t0906600-01 | Rice | cytosol | 47.37 | 4.51 |
| GSMUA_Achr8P09010_001 | Banana | cytosol | 49.12 | 4.49 |
| HORVU3Hr1G088480.1 | Barley | mitochondrion | 49.12 | 4.31 |
| Zm00001d042450_P002 | Maize | cytosol | 45.61 | 4.26 |
| EES04067 | Sorghum | cytosol | 45.61 | 4.25 |
Protein Annotations
Description
AT5G63200 (E=6e-019) | tetratricopeptide repeat (TPR)-containing protein
Coordinates
chrA09:+:30224886..30225193
Molecular Weight (calculated)
6716.1 Da
IEP (calculated)
6.501
GRAVY (calculated)
-0.651
Length
57 amino acids
Sequence
(BLAST)
(BLAST)
1: MEERAMYSLK QAVTEDPEDA VRWHQVGLHC LCSQQYKLSQ KYLNPAAYLN VKLMEKE
001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.