Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G088460.2 | Barley | cytosol | 94.92 | 100.0 |
| TraesCS3A01G390800.2 | Wheat | cytosol | 91.54 | 96.59 |
| TraesCS3B01G422600.2 | Wheat | cytosol | 91.38 | 96.43 |
| TraesCS3D01G383400.1 | Wheat | cytosol | 90.15 | 96.22 |
| Os01t0906600-01 | Rice | cytosol | 76.77 | 83.31 |
| Zm00001d042450_P002 | Maize | cytosol | 76.62 | 81.64 |
| EES04067 | Sorghum | cytosol | 76.46 | 81.21 |
| GSMUA_Achr8P09010_001 | Banana | cytosol | 58.0 | 60.51 |
| VIT_17s0000g09890.t01 | Wine grape | cytosol | 54.92 | 54.26 |
| AT5G63200.1 | Thale cress | cytosol | 53.38 | 53.47 |
| KRH63690 | Soybean | cytosol | 52.31 | 52.8 |
| CDY48133 | Canola | cytosol | 52.46 | 51.75 |
| KRH54254 | Soybean | cytosol, nucleus | 50.92 | 51.48 |
| PGSC0003DMT400069629 | Potato | cytosol | 52.0 | 51.45 |
| CDY16731 | Canola | cytosol | 52.31 | 51.44 |
| Solyc06g071850.2.1 | Tomato | nucleus | 51.85 | 51.29 |
| Bra035851.1-P | Field mustard | cytosol | 52.15 | 51.21 |
| Bra007638.1-P | Field mustard | cytosol | 4.31 | 49.12 |
| CDY08125 | Canola | cytosol | 4.46 | 45.31 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | UniProt:A0A287M5C4 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:HORVU3Hr1G088480 | EnsemblPlants:HORVU3Hr1G088480.1 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF13176 |
| PFAM:PF13181 | PFAM:PF14559 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR45523 | SMART:SM00028 |
| SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI000B460039 | SEG:seg |
Description
No Description!
Coordinates
chrchr3H:+:625117337..625122341
Molecular Weight (calculated)
70149.5 Da
IEP (calculated)
5.894
GRAVY (calculated)
-0.152
Length
650 amino acids
Sequence
(BLAST)
(BLAST)
001: RRGGHLVATV PGSASASPRP VLAPSPETRV ETMLEAKPPP PQRAMMLADL NVDPPESDGE DRPPTPKPNP AAAAAAAAVA AAAAAPVVAV DSSTRSCNEE
101: GSLAKNTTAA KEPDTVECED VEQHCPGASV SREEKVSSLK AALVNVARKM PKNAHAHFML GLMYQRLGQP QKAIIAYDKS SEILLQDEQE VRRPDLLSSV
201: RIHHAQCILQ ASMGDSFDEE LDTSELSEIL VKLKSSVELD PRQAAVWNIL GLVLLRGGQL QSAISVFSTL TTVAPDYLDS LANLGVAYIQ SGDLELSTKC
301: FQELVLKDQS HPAALMNYGA LLLCKYGSLA AAGASGAVSA GSYLRQKEAL VAAKECLLAA VRSDPKAASV WVNLANAYHM SGEHRNSKRC LEQAAKFEPN
401: HMPARYAIAV HRIRDAVRSQ CSDDQLIWAA SEMATVLKEG DTSVVDLPVA WAGLAMAHRA QHEIAAAYDG EQAILIEAEE RALYTLKQAI QEDPDDAVQW
501: HQLGLYNMCT TQFSRSVNFL KAAIARSPEC CYAWSNLGIA LQLSNDPSSE TVYKRALVLS SSQQSYAILS NIGILYRQHR LYELARKMLS RSLEICPGYA
601: PANNNLGLVF VAEGRWEDAI SCFENAVKSD DLLDAAKSNL AKALTLAKKQ
101: GSLAKNTTAA KEPDTVECED VEQHCPGASV SREEKVSSLK AALVNVARKM PKNAHAHFML GLMYQRLGQP QKAIIAYDKS SEILLQDEQE VRRPDLLSSV
201: RIHHAQCILQ ASMGDSFDEE LDTSELSEIL VKLKSSVELD PRQAAVWNIL GLVLLRGGQL QSAISVFSTL TTVAPDYLDS LANLGVAYIQ SGDLELSTKC
301: FQELVLKDQS HPAALMNYGA LLLCKYGSLA AAGASGAVSA GSYLRQKEAL VAAKECLLAA VRSDPKAASV WVNLANAYHM SGEHRNSKRC LEQAAKFEPN
401: HMPARYAIAV HRIRDAVRSQ CSDDQLIWAA SEMATVLKEG DTSVVDLPVA WAGLAMAHRA QHEIAAAYDG EQAILIEAEE RALYTLKQAI QEDPDDAVQW
501: HQLGLYNMCT TQFSRSVNFL KAAIARSPEC CYAWSNLGIA LQLSNDPSSE TVYKRALVLS SSQQSYAILS NIGILYRQHR LYELARKMLS RSLEICPGYA
601: PANNNLGLVF VAEGRWEDAI SCFENAVKSD DLLDAAKSNL AKALTLAKKQ
001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.