Factsheet for VIT_17s0000g09890.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g00740.t01
VIT_16s0022g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63200.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT5G63200.1	VIT_08s0007g00740.t01	AT5G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63690	Soybean	cytosol	70.36	71.89
KRH54254	Soybean	cytosol, nucleus	69.91	71.54
Solyc06g071850.2.1	Tomato	nucleus	66.11	66.21
PGSC0003DMT400069629	Potato	cytosol	66.11	66.21
AT5G63200.1	Thale cress	cytosol	63.98	64.87
GSMUA_Achr8P09010_001	Banana	cytosol	60.94	64.37
Bra035851.1-P	Field mustard	cytosol	64.59	64.2
CDY16731	Canola	cytosol	64.29	63.99
CDY48133	Canola	cytosol	63.07	62.97
Os01t0906600-01	Rice	cytosol	56.38	61.94
Bra007638.1-P	Field mustard	cytosol	5.17	59.65
EES04067	Sorghum	cytosol	55.02	59.15
Zm00001d042450_P002	Maize	cytosol	54.56	58.85
TraesCS3D01G383400.1	Wheat	cytosol	53.95	58.29
TraesCS3A01G390800.2	Wheat	cytosol	54.1	57.79
TraesCS3B01G422600.2	Wheat	cytosol	53.65	57.31
HORVU3Hr1G088460.2	Barley	cytosol	53.65	57.21
CDY08125	Canola	cytosol	5.47	56.25
HORVU3Hr1G088480.1	Barley	mitochondrion	54.26	54.92

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100256924	wikigene:100256924	MapMan:35.2	ProteinID:CBI14892	ProteinID:CBI14892.3
UniProt:D7SHD3	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100256924	wikigene:LOC100256924	PFAM:PF13181	PFAM:PF13424
PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR45523	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00015C8604	ArrayExpress:VIT_17s0000g09890	EnsemblPlantsGene:VIT_17s0000g09890
EnsemblPlants:VIT_17s0000g09890.t01	RefSeq:XP_002275611	RefSeq:XP_002275611.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:11826668..11853074

Molecular Weight (calculated)

72298.2 Da

IEP (calculated)

5.733

GRAVY (calculated)

-0.321

Length

658 amino acids

Sequence
(BLAST)

001: MSEPAATKPQ PLPIKSEVGV TENSADESSK RPQISKVVVL ADLNVDPPET DDDDSLHVSA PDLTRLTNDD SSQDKSTLVS KDTDMVDGEG KRLNKLGKPR
101: SRVTKVEYPL DYGADADADQ HGQGAPTSRE EKVSSLKTGL VHVARKMPKN AHAHFILGLM YQRLGQPQKA VSAYEKAAEI LLRCEEEIDR PELLSLVQIH
201: HAQCLLLGSS GDHSADKELE PEELEEILLK MKDSMQSDIR QAAVWNTLGL ILLRTGRLQN AISVLSSLLT IAPDNLDCLG NLGIAYLRSG NLELAEKCFQ
301: NLILKDQNHP AALINYAAVL MCKYGSIIAG AGANSGEGAS EDQLIAANVA KECLLAAVKV EPKAAHVWAN LANAYYLMGD CRSSSKCFEK AAKLEPNCMS
401: TRYAVAVHQI KDAERYQDPS EQLSWAGNEM ASILREGDSA LIEHPIAWAG LAMVHKIQNE IAAAFETEHK GLMEMEERAV HILKQAIAED PDDAVQWHQL
501: GLHNLCVQQF KTSQKYLKAA VARSKECSYM WSNLGISLQL SEEPAQAEQV YKRALSLVTP QQAYTIFSNL GNLYRQQKKY QSAKAMFTKS LELQPGYAPA
601: YNNLGLVFIA EGRWKEAEFC FNKALQADPL LDAAKSNMIK AAAMSRVCQH LSSCSLQD

Best Arabidopsis Sequence Match ( AT5G63200.1 )
(BLAST)

001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.