Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra013872.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63200.1 | Bra013872.1-P | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16731 | Canola | cytosol | 97.89 | 98.03 |
| AT5G63200.1 | Thale cress | cytosol | 87.46 | 89.21 |
| Bra007638.1-P | Field mustard | cytosol | 6.65 | 77.19 |
| VIT_17s0000g09890.t01 | Wine grape | cytosol | 64.2 | 64.59 |
| KRH63690 | Soybean | cytosol | 60.42 | 62.11 |
| KRH54254 | Soybean | cytosol, nucleus | 60.12 | 61.9 |
| PGSC0003DMT400069629 | Potato | cytosol | 59.21 | 59.67 |
| Solyc06g071850.2.1 | Tomato | nucleus | 58.91 | 59.36 |
| GSMUA_Achr8P09010_001 | Banana | cytosol | 53.78 | 57.14 |
| Zm00001d042450_P002 | Maize | cytosol | 52.27 | 56.72 |
| Os01t0906600-01 | Rice | cytosol | 50.91 | 56.26 |
| EES04067 | Sorghum | cytosol | 51.96 | 56.21 |
| TraesCS3D01G383400.1 | Wheat | cytosol | 50.45 | 54.84 |
| TraesCS3A01G390800.2 | Wheat | cytosol | 50.6 | 54.38 |
| HORVU3Hr1G088460.2 | Barley | cytosol | 50.6 | 54.3 |
| TraesCS3B01G422600.2 | Wheat | cytosol | 50.45 | 54.22 |
| HORVU3Hr1G088480.1 | Barley | mitochondrion | 51.21 | 52.15 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | EnsemblPlantsGene:Bra035851 | EnsemblPlants:Bra035851.1 | EnsemblPlants:Bra035851.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:M4F451 |
| PFAM:PF07719 | PFAM:PF13181 | PFAM:PF13424 | PFAM:PF13432 | PFscan:PS50005 | PFscan:PS50293 |
| PANTHER:PTHR45523 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_2 |
| InterPro:TPR_repeat | UniParc:UPI0002542119 | SEG:seg | : | : | : |
Description
AT5G63200 (E=0.0) | tetratricopeptide repeat (TPR)-containing protein
Coordinates
chrA09:+:3304830..3307956
Molecular Weight (calculated)
72522.2 Da
IEP (calculated)
5.274
GRAVY (calculated)
-0.289
Length
662 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPETIAVK HEPTTVDSPS SSSAVAVDNK PARPQKLVVL ADLNFNPPES DDLDSSSIQI PTPSIITRLS NEESNQDGGL LTCKEVEPGE LEAKKISKVG
101: KCRSRSKIEV SSDCAVDADG DQASQGVPAS REEKISNLKM GLIHVARKMP RNAHAHFILG LMFQRLGQSQ KAIPEYEKAE EILLGCEPEI ARPELLLLVQ
201: MHHGQCLLLD GFADSDSVKE IEGEELEEIL SKLKDSMKLD VRQATVWNTL GLMLLKAGCL MSAISVLSSL LALVPDNYDC LTNLGVAYLQ SGDLELSAKC
301: FQDLVLKDHN HPAALINYAA ELLCKHSSTV AGAGANGGPE ASEDQKAHLN VAKECLLAAV RADPKSAHAW VNLANSYYLM GDHRSSSKCL EKAAKLDPNC
401: MATRFAVAVQ RIKDAERSQD ASEQLSWAGN EMASVIREGE SVPIDPPIAW AGLAMAHKAH HEIAAAFVAD RNELTEMEER AMFSLKQAVS EDPEDAVRWH
501: QLGLHCLCSQ QYKLSQKYLK AAVSRSRECS YAWSNLGISL QLSDEQSEAE EVYKRALAVS TEDQAHATFS NLGNLYRQKK QYELSKAMFS KALDLKPGYA
601: PAYNNLGLVF VAERRWEEAK FCFEKALEAD SLLDAAQSNL LKAKTMSRLC TCFTSSTVVQ DS
101: KCRSRSKIEV SSDCAVDADG DQASQGVPAS REEKISNLKM GLIHVARKMP RNAHAHFILG LMFQRLGQSQ KAIPEYEKAE EILLGCEPEI ARPELLLLVQ
201: MHHGQCLLLD GFADSDSVKE IEGEELEEIL SKLKDSMKLD VRQATVWNTL GLMLLKAGCL MSAISVLSSL LALVPDNYDC LTNLGVAYLQ SGDLELSAKC
301: FQDLVLKDHN HPAALINYAA ELLCKHSSTV AGAGANGGPE ASEDQKAHLN VAKECLLAAV RADPKSAHAW VNLANSYYLM GDHRSSSKCL EKAAKLDPNC
401: MATRFAVAVQ RIKDAERSQD ASEQLSWAGN EMASVIREGE SVPIDPPIAW AGLAMAHKAH HEIAAAFVAD RNELTEMEER AMFSLKQAVS EDPEDAVRWH
501: QLGLHCLCSQ QYKLSQKYLK AAVSRSRECS YAWSNLGISL QLSDEQSEAE EVYKRALAVS TEDQAHATFS NLGNLYRQKK QYELSKAMFS KALDLKPGYA
601: PAYNNLGLVF VAERRWEEAK FCFEKALEAD SLLDAAQSNL LKAKTMSRLC TCFTSSTVVQ DS
001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.