Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G390800.2 | Wheat | cytosol | 96.27 | 96.43 |
| TraesCS3B01G422600.2 | Wheat | cytosol | 96.11 | 96.27 |
| TraesCS3D01G383400.1 | Wheat | cytosol | 94.81 | 96.06 |
| HORVU3Hr1G088480.1 | Barley | mitochondrion | 100.0 | 94.92 |
| Os01t0906600-01 | Rice | cytosol | 80.88 | 83.31 |
| Zm00001d042450_P002 | Maize | cytosol | 80.71 | 81.64 |
| EES04067 | Sorghum | cytosol | 80.55 | 81.21 |
| GSMUA_Achr8P09010_001 | Banana | cytosol | 60.62 | 60.03 |
| VIT_17s0000g09890.t01 | Wine grape | cytosol | 57.21 | 53.65 |
| AT5G63200.1 | Thale cress | cytosol | 56.08 | 53.31 |
| KRH63690 | Soybean | cytosol | 54.78 | 52.48 |
| KRH54254 | Soybean | cytosol, nucleus | 53.48 | 51.32 |
| PGSC0003DMT400069629 | Potato | cytosol | 54.46 | 51.14 |
| Solyc06g071850.2.1 | Tomato | nucleus | 54.46 | 51.14 |
| CDY48133 | Canola | cytosol | 54.62 | 51.14 |
| CDY16731 | Canola | cytosol | 54.46 | 50.83 |
| Bra035851.1-P | Field mustard | cytosol | 54.3 | 50.6 |
| Bra007638.1-P | Field mustard | cytosol | 4.54 | 49.12 |
| CDY08125 | Canola | cytosol | 4.7 | 45.31 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | EMBL:AK364715 | UniProt:F2DLE7 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:HORVU3Hr1G088460 | EnsemblPlants:HORVU3Hr1G088460.2 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| PFAM:PF13176 | PFAM:PF13181 | PFAM:PF14559 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR45523 |
| SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI0002006D33 |
| SEG:seg | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DLE7]
Coordinates
chrchr3H:-:624984223..624988609
Molecular Weight (calculated)
66842.6 Da
IEP (calculated)
5.513
GRAVY (calculated)
-0.145
Length
617 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEAKPPPPQ RAMMLADLNV DPPESDGEDR PPTPKPNPAA AAAAAAVAAA AAAPVVAVDS STRSCNEEGS LAKNTTAAKE PDTVECEDVE QHCPGASVSR
101: EEKVSSLKAA LVNVARKMPK NAHAHFMLGL MYQRLGQPQK AIIAYDKSSE ILLQDEQEVR RPDLLSSVRI HHAQCILQAS MGDSFDEELD TSELSEILVK
201: LKSSVELDPR QAAVWNILGL VLLRGGQLQS AISVFSTLTT VAPDYLDSLA NLGVAYIQSG DLELSTKCFQ ELVLKDQSHP AALMNYGALL LCKYGSLAAG
301: ASGAVSAGSY LRQKEALVAA KECLLAAVRS DPKAASVWVN LANAYHMSGE HRNSKRCLEQ AAKFEPNHMP ARYAIAVHRI RDAVRSQCSD DQLIWAASEM
401: ATVLKEGDTS VVDLPVAWAG LAMAHRAQHE IAAAYDGEQA ILIEAEERAL YTLKQAIQED PDDAVQWHQL GLYNMCTTQF SRSVNFLKAA IARSPECCYA
501: WSNLGIALQL SNDPSSETVY KRALVLSSSQ QSYAILSNIG ILYRQHRLYE LARKMLSRSL EICPGYAPAN NNLGLVFVAE GRWEDAISCF ENAVKSDDLL
601: DAAKSNLAKA LTLAKKQ
101: EEKVSSLKAA LVNVARKMPK NAHAHFMLGL MYQRLGQPQK AIIAYDKSSE ILLQDEQEVR RPDLLSSVRI HHAQCILQAS MGDSFDEELD TSELSEILVK
201: LKSSVELDPR QAAVWNILGL VLLRGGQLQS AISVFSTLTT VAPDYLDSLA NLGVAYIQSG DLELSTKCFQ ELVLKDQSHP AALMNYGALL LCKYGSLAAG
301: ASGAVSAGSY LRQKEALVAA KECLLAAVRS DPKAASVWVN LANAYHMSGE HRNSKRCLEQ AAKFEPNHMP ARYAIAVHRI RDAVRSQCSD DQLIWAASEM
401: ATVLKEGDTS VVDLPVAWAG LAMAHRAQHE IAAAYDGEQA ILIEAEERAL YTLKQAIQED PDDAVQWHQL GLYNMCTTQF SRSVNFLKAA IARSPECCYA
501: WSNLGIALQL SNDPSSETVY KRALVLSSSQ QSYAILSNIG ILYRQHRLYE LARKMLSRSL EICPGYAPAN NNLGLVFVAE GRWEDAISCF ENAVKSDDLL
601: DAAKSNLAKA LTLAKKQ
001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.