Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G422600.2 | Wheat | cytosol | 98.69 | 97.56 |
| TraesCS3A01G390800.2 | Wheat | cytosol | 97.87 | 96.75 |
| HORVU3Hr1G088460.2 | Barley | cytosol | 96.06 | 94.81 |
| HORVU3Hr1G088480.1 | Barley | mitochondrion | 96.22 | 90.15 |
| Os01t0906600-01 | Rice | cytosol | 83.09 | 84.47 |
| Zm00001d042450_P002 | Maize | cytosol | 81.44 | 81.31 |
| EES04067 | Sorghum | cytosol | 81.12 | 80.72 |
| GSMUA_Achr8P09010_001 | Banana | cytosol | 61.58 | 60.19 |
| VIT_17s0000g09890.t01 | Wine grape | cytosol | 58.29 | 53.95 |
| AT5G63200.1 | Thale cress | cytosol | 56.98 | 53.47 |
| KRH63690 | Soybean | cytosol | 55.83 | 52.8 |
| KRH54254 | Soybean | cytosol, nucleus | 54.52 | 51.63 |
| Solyc06g071850.2.1 | Tomato | nucleus | 55.5 | 51.45 |
| PGSC0003DMT400069629 | Potato | cytosol | 55.34 | 51.29 |
| CDY48133 | Canola | cytosol | 55.01 | 50.83 |
| CDY16731 | Canola | cytosol | 55.01 | 50.68 |
| Bra035851.1-P | Field mustard | cytosol | 54.84 | 50.45 |
| Bra007638.1-P | Field mustard | cytosol | 4.6 | 49.12 |
| CDY08125 | Canola | cytosol | 4.76 | 45.31 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G383400.1 | EnsemblPlantsGene:TraesCS3D01G383400 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| PANTHER:PTHR45523 | PFAM:PF13176 | PFAM:PF13181 | PFAM:PF14559 | PFscan:PS50005 | PFscan:PS50293 |
| SEG:seg | SMART:SM00028 | SUPFAM:SSF48452 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3D:+:498867138..498873212
Molecular Weight (calculated)
66269.9 Da
IEP (calculated)
5.489
GRAVY (calculated)
-0.172
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEAQPPPPP RAMMLADLNV DPPESDGEDH PPTPKPNPAI AAAAPVVAVD SSTRSCNDEG SLAKSMTTTK EPDTVECEDV EQHCPGASVS REEKVSNLKA
101: ALVNVARKMP KNAHAHFMLG LMYQRLGQPQ KAIIAYDKSS EILLQDEQEV RRPDLLSSVR IHHAQCILQA SMGDSFDEEL DASELSEILV KLKSSVELDP
201: RQAAVWNILG LVLLRGGQLQ SAISVFSTLT TVAPDYLDSL ANLGVAYIQS GDLELATKCF QELVLKDQSH PAALVNYGAL LLCKYGSLAA AGASGTVNAG
301: SYLHQKEALV AAKECLLAAV RSDPKAASIW VNLANAYHMA GEHRNSKRCL EQAAKFEPNH MPARYAIAVH RIRDAVRSQC SDDQLIWAAN EMATVLKEGD
401: TSVVDLPVAW AGLAMAHRAQ HEIAAAYDGE QAILNEAEER ALYTLKQAIQ EDPDDAVQWH QLGLYNMCTT QFSRSVNFLK AAIARSPECC YAWSNLGIAL
501: QLSNDPSSET VYKRALVLSS SQQSYAILSN IGILYRQHRL YELARKMLSR SLEICPGYAP ANNNLGLVFV AEGRWEDAVS CFEKAVKSDD LLDAAKSNLA
601: KALALAKKQ
101: ALVNVARKMP KNAHAHFMLG LMYQRLGQPQ KAIIAYDKSS EILLQDEQEV RRPDLLSSVR IHHAQCILQA SMGDSFDEEL DASELSEILV KLKSSVELDP
201: RQAAVWNILG LVLLRGGQLQ SAISVFSTLT TVAPDYLDSL ANLGVAYIQS GDLELATKCF QELVLKDQSH PAALVNYGAL LLCKYGSLAA AGASGTVNAG
301: SYLHQKEALV AAKECLLAAV RSDPKAASIW VNLANAYHMA GEHRNSKRCL EQAAKFEPNH MPARYAIAVH RIRDAVRSQC SDDQLIWAAN EMATVLKEGD
401: TSVVDLPVAW AGLAMAHRAQ HEIAAAYDGE QAILNEAEER ALYTLKQAIQ EDPDDAVQWH QLGLYNMCTT QFSRSVNFLK AAIARSPECC YAWSNLGIAL
501: QLSNDPSSET VYKRALVLSS SQQSYAILSN IGILYRQHRL YELARKMLSR SLEICPGYAP ANNNLGLVFV AEGRWEDAVS CFEKAVKSDD LLDAAKSNLA
601: KALALAKKQ
001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.